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java.lang.Objectjava.util.Observable
toxTree.tree.AbstractRule
toxTree.tree.AbstractRuleHilightHits
toxTree.tree.rules.RuleSubstructures
toxTree.tree.rules.RuleRings
toxTree.tree.rules.RuleRingSubstituents
toxTree.tree.rules.RuleRingAllowedSubstituents
verhaar.rules.RuleRingMainStrucSubstituents
public abstract class RuleRingMainStrucSubstituents
Field Summary | |
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protected org.openscience.cdk.isomorphism.matchers.QueryAtomContainer |
mainStructure
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Fields inherited from class toxTree.tree.rules.RuleRingSubstituents |
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analyzeOnlyRingsWithFlagSet, CONDITION_FAILED, CYCLIC_SUBSTITUENT, ERR_PRECONDITION_FAILED, flags, LONGCHAIN_SUBSTITUENT |
Fields inherited from class toxTree.tree.rules.RuleSubstructures |
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ids, MSG_HASGROUP, query |
Fields inherited from class toxTree.tree.AbstractRule |
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changes, editable, ERR_STRUCTURENOTPREPROCESSED, examples, explanation, id, logger, MSG_NO, MSG_YES, no, residueIDHidden, title |
Fields inherited from interface toxTree.core.XMLSerializable |
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xmltag_CATEGORIES, xmltag_CATEGORY, xmltag_CATEGORYTHRESHOLD, xmltag_CLASS, xmltag_EXPLANATION, xmltag_ID, xmltag_METHOD, xmltag_METHODPARAMETER, xmltag_METHODS, xmltag_NAME, xmltag_RULE, xmltag_RULEEXAMPLE, xmltag_RULES, xmltag_TREEROOT |
Constructor Summary | |
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RuleRingMainStrucSubstituents()
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Method Summary | |
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protected abstract org.openscience.cdk.isomorphism.matchers.QueryAtomContainer |
createMainStructure()
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Methods inherited from class toxTree.tree.rules.RuleRingAllowedSubstituents |
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isImplemented, substituentIsAllowed, verifyRule, verifyRule |
Methods inherited from class toxTree.tree.rules.RuleRingSubstituents |
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allowedSubstituents, analyze, analyzeOnlyRingsWithFlagSet, clearFlags, setAnalyzeAromatic, setAnalyzeHeterocyclic, setAnalyzeOnlyRingsWithFlagSet |
Methods inherited from class toxTree.tree.rules.RuleRings |
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hasRingsToProcess |
Methods inherited from class toxTree.tree.rules.RuleSubstructures |
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addSubstructure, clearSubstructures, equals, getIds, getQuery, getSubstructure, getSubstructures, getSubstructuresCount, removeSubstructure, setIds, setQuery, setSubstructure |
Methods inherited from class toxTree.tree.AbstractRuleHilightHits |
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getSelector |
Methods inherited from class toxTree.tree.AbstractRule |
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addPropertyChangeListener, clearFlags, clone, createRule, fromXML, getEditor, getExampleMolecule, getExamples, getExplanation, getID, getNum, getTitle, hideResiduesID, isEditable, isResidueIDHidden, log, log, log, makeMolecule, removePropertyChangeListener, setEditable, setExampleMolecule, setExamples, setExplanation, setID, setNum, setTitle, toShallowXML, toString, toXML |
Methods inherited from class java.util.Observable |
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addObserver, clearChanged, countObservers, deleteObserver, deleteObservers, hasChanged, notifyObservers, notifyObservers, setChanged |
Methods inherited from class java.lang.Object |
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finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Methods inherited from interface toxTree.core.IDecisionRule |
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addPropertyChangeListener, clearFlags, clone, getEditor, getExampleMolecule, getExplanation, getID, getNum, getSelector, getTitle, hideResiduesID, isEditable, isResidueIDHidden, removePropertyChangeListener, setEditable, setExampleMolecule, setExplanation, setID, setNum, setTitle, toString |
Field Detail |
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protected org.openscience.cdk.isomorphism.matchers.QueryAtomContainer mainStructure
Constructor Detail |
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public RuleRingMainStrucSubstituents()
Method Detail |
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protected abstract org.openscience.cdk.isomorphism.matchers.QueryAtomContainer createMainStructure()
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