Uses of Interface
toxTree.core.IDecisionInteractive

Packages that use IDecisionInteractive
com.molecularnetworks.start   
cramer2 Class CramerRules is the implementation of Cramer rules [Cramer et al,78]. 
eye Class SicretRules is the implementation of BfR rules for estimating skin irritation and corrosion potential. 
eye.rules The package contains implementations of IDecisionRule rules for SicretRules decision tree. 
mic   
mic.rules   
michaelacceptors   
mutant   
mutant.rules   
sicret Class SicretRules is the implementation of BfR rules for estimating skin irritation and corrosion potential. 
sicret.rules The package contains implementations of IDecisionRule rules for SicretRules decision tree. 
toxtree.plugins.dnabinding   
toxtree.plugins.dnabinding.rules   
toxtree.plugins.func   
toxtree.plugins.func.rules   
toxtree.plugins.kroes   
toxtree.plugins.kroes.rules   
toxtree.plugins.lewis   
toxtree.plugins.moa   
toxtree.plugins.moa.rules   
toxtree.plugins.proteinbinding   
toxtree.plugins.proteinbinding.rules   
toxtree.plugins.search   
toxtree.plugins.skinsensitisation   
toxtree.plugins.skinsensitisation.rules   
toxtree.plugins.smartcyp   
toxtree.plugins.verhaar2 Class toxtree.plugins.verhaar2.VerhaarScheme is the implementation of modified Verhaar structural scheme, according to recommendation from 
toxTree.tree This packages contains abstract and default classes implementing the interfaces defined in toxTree.core package. 
toxTree.tree.cramer Class CramerRules is the implementation of Cramer rules [Cramer et al,78]. 
toxTree.tree.demo Two simple demo decision trees. 
toxTree.tree.rules The package contains several generic implementations of IDecisionRule rules 
verhaar Class VerhaarScheme is the implementation of Verhaar structural scheme for estimating toxicity mode of action. 
verhaar.rules The package contains implementations of IDecisionRule rules for VerhaarScheme decision tree. 
 

Uses of IDecisionInteractive in com.molecularnetworks.start
 

Classes in com.molecularnetworks.start that implement IDecisionInteractive
 class BiodgeradationRules
          Wrapper class that knows the biodegradation rules that are available in the toxBiodegradation plugin.
 

Uses of IDecisionInteractive in cramer2
 

Classes in cramer2 that implement IDecisionInteractive
 class CramerRulesWithExtensions
          TODO update An UserDefinedTree descendant, implementing the decision tree described in "Cramer G.
 

Uses of IDecisionInteractive in eye
 

Classes in eye that implement IDecisionInteractive
 class EyeIrritationRules
          Decision tree for estimating skin irritation and corrosion potential.
 

Uses of IDecisionInteractive in eye.rules
 

Classes in eye.rules that implement IDecisionInteractive
 class Rule1
           
 class RuleAqueousSolubility_10_2
          AqueousSolubility < 0.1
 class RuleAqueousSolubility_10_5
          AqueousSolubility < 0.001
 class RuleAqueousSolubility_11_7
           
 class RuleAqueousSolubility_8_3
           
 class RuleAqueousSolubility_8_4
           
 class RuleAqueousSolubility_9_3
          AqueousSolubility < 0.0001
 class RuleAqueousSolubility1
           
 class RuleLipidSolubility_10_4
          LipidSolubility < 400.0
 class RuleLipidSolubility_9_1
           
 class RuleLogP_10_1
          LogKow > 3.8
 class RuleLogP_11_4
          LogKow < -2
 class RuleLogP_11_5
          LogKow > 3.6
 class RuleLogP_11_6
           
 class RuleLogP_12_4
          LogP > 4.5
 class RuleLogP_9_4
          LogKow > 5.5
 class RuleLogP1
           
 class RuleMelting_Point_11_3
          MeltingPoint > 200.0
 class RuleMeltingPoint_11_2
          MeltingPoint > 200.0
 class RuleMeltingPoint_12_3
          MeltingPoint > 65.0
 class RuleMeltingPoint_8_1
           
 class RuleMolWeight_10_3
          Molecular Weight > 370.0
 class RuleMolWeight_11_1
          Molecular Weight > 620
 class RuleMolweight_12_1
          MoleculWeight > 370
 class RuleMolWeight_12_2
          Molecular Weight > 280
 class RuleMolWeight_8_2
           
 class RuleMolWeight_9_2
          MoleculWeight > 290.0
 

Uses of IDecisionInteractive in mic
 

Classes in mic that implement IDecisionInteractive
 class MICRules
           
 

Uses of IDecisionInteractive in mic.rules
 

Classes in mic.rules that implement IDecisionInteractive
 class RuleAlertsForMIC
           
 

Uses of IDecisionInteractive in michaelacceptors
 

Classes in michaelacceptors that implement IDecisionInteractive
 class MichaelAcceptorRules
           
 

Uses of IDecisionInteractive in mutant
 

Classes in mutant that implement IDecisionInteractive
 class BB_CarcMutRules
           
 

Uses of IDecisionInteractive in mutant.rules
 

Classes in mutant.rules that implement IDecisionInteractive
 class QSAR6Applicable
           
 class RuleAlertsForCarcinogenicity
           
 class RuleAlertsForGenotoxicCarcinogenicity
           
 class RuleAlertsNongenotoxicCarcinogenicity
           
 class UserInputABUnsaturatedAldehyde
           
 class UserInputAromaticAmine
           
 class VerifyAlertsGenotoxic
           
 class VerifyAlertsNongenotoxic
           
 

Uses of IDecisionInteractive in sicret
 

Classes in sicret that implement IDecisionInteractive
 class SicretRules
          Decision tree for estimating skin irritation and corrosion potential.
 

Uses of IDecisionInteractive in sicret.rules
 

Classes in sicret.rules that implement IDecisionInteractive
 class Rule11
          LogKow > 4.5
 class Rule12
          VapourPressure < 0.0001
 class Rule13
          Molecular Weight > 540.0
 class Rule14
          MeltingPoint > 180.0
 class Rule15
          AqueousSolubility < 0.0001
 class Rule16
          LogKow > 5.5
 class Rule17
          LogKow > 3.8
 class Rule18
          AqueousSolubility < 0.1
 class Rule19
          MoleculWeight > 370.0
 class Rule20
          LipidSolubility < 400.0
 class Rule21
          MoleculWeight > 380.0
 class Rule22
          LipidSolubility < 4.0
 class Rule23
          AqueousSolubility < 0.001
 class Rule24
          Molecular Weight > 620.0
 class Rule25
          MeltingPoint > 50.0
 class Rule26
          SurfaceTension > 62.0
 class Rule27
          MeltingPoint > 120.0
 class Rule28
          LogKow < 0.5
 class Rule29
          Molecular Weight > 370.0
 class Rule30
          Molecular Weight > 280.0
 class Rule4
          MeltingPoint > 55.0
 class Rule8
          LipidSolubility < 0.4
 class Rule9
          MoleculWeight > 290.0
 class RuleAqueousSolubility
          AqueousSolubility < 0.1.
 class RuleLipidSolubility
          LipidSolubility < 0.01.
 class RuleLogP
          LogP < 3.1.
Expects property to be read from IMolecule.getProperty(RuleLogP.LogKow).
 class RuleMeltingPoint
          MeltingPoint < 200.
 class RuleMolWeight
          Molecular weight > 350.
 class RuleSurfaceTension
          SurfaceTension > 62.0.
 class RuleVapourPressure
          VapourPressure < 0.0001.
 

Uses of IDecisionInteractive in toxtree.plugins.dnabinding
 

Classes in toxtree.plugins.dnabinding that implement IDecisionInteractive
 class DNABindingPlugin
          Protein binding
 

Uses of IDecisionInteractive in toxtree.plugins.dnabinding.rules
 

Classes in toxtree.plugins.dnabinding.rules that implement IDecisionInteractive
 class RuleDNABindingAlerts
           
 class VerifyAlertsDNABinding
           
 

Uses of IDecisionInteractive in toxtree.plugins.func
 

Classes in toxtree.plugins.func that implement IDecisionInteractive
 class FuncRules
           
 

Uses of IDecisionInteractive in toxtree.plugins.func.rules
 

Classes in toxtree.plugins.func.rules that implement IDecisionInteractive
 class RuleAlertsForFunc
           
 

Uses of IDecisionInteractive in toxtree.plugins.kroes
 

Classes in toxtree.plugins.kroes that implement IDecisionInteractive
 class Kroes1Tree
           
 

Uses of IDecisionInteractive in toxtree.plugins.kroes.rules
 

Classes in toxtree.plugins.kroes.rules that implement IDecisionInteractive
 class KroesRule11
           
 class KroesRule12
          Does estimated intake exceed 1800 µg/day ?
 class KroesRule2
          Are there structural alerts that raise concern for potential genotoxicity?
 class KroesRule4
          Does estimated intake exceed TTC of 0.15 µg/day ?
 class KroesRule5
          Does estimated intake exceed TTC of 1.5 mcg/day ?
 class KroesRule7
          Does estimated intake exceed TTC of 18µg/day ?
 class KroesRule9
           
 class RuleVerifyIntake
           
 

Uses of IDecisionInteractive in toxtree.plugins.lewis
 

Classes in toxtree.plugins.lewis that implement IDecisionInteractive
 class LewisTree
           derived by Weka from table2.
 

Uses of IDecisionInteractive in toxtree.plugins.moa
 

Classes in toxtree.plugins.moa that implement IDecisionInteractive
 class MOARules
           
 

Uses of IDecisionInteractive in toxtree.plugins.moa.rules
 

Classes in toxtree.plugins.moa.rules that implement IDecisionInteractive
 class RuleAlertsAche
           
 class RuleAlertsCNS
           
 class RuleAlertsNarcosis2_2_1
           
 class RuleAlertsNarcosis3
           
 class RuleAlertsReactive
           
 class RuleAlertsUncouplers
           
 class VerifyAlertsAche
           
 class VerifyAlertsCNS
           
 class VerifyAlertsNarcosis1
           
 class VerifyAlertsNarcosis2
           
 class VerifyAlertsNarcosis3
           
 class VerifyAlertsReactive
           
 class VerifyAlertsUncouplers
           
 

Uses of IDecisionInteractive in toxtree.plugins.proteinbinding
 

Classes in toxtree.plugins.proteinbinding that implement IDecisionInteractive
 class ProteinBindingPlugin
          Protein binding
 

Uses of IDecisionInteractive in toxtree.plugins.proteinbinding.rules
 

Classes in toxtree.plugins.proteinbinding.rules that implement IDecisionInteractive
 class RuleProteinBindingAlerts
           
 class VerifyAlertsProteinBinding
           
 

Uses of IDecisionInteractive in toxtree.plugins.search
 

Classes in toxtree.plugins.search that implement IDecisionInteractive
 class CompoundLookup
           
 

Uses of IDecisionInteractive in toxtree.plugins.skinsensitisation
 

Classes in toxtree.plugins.skinsensitisation that implement IDecisionInteractive
 class SkinSensitisationPlugin
          Skin sensitisation
 

Uses of IDecisionInteractive in toxtree.plugins.skinsensitisation.rules
 

Classes in toxtree.plugins.skinsensitisation.rules that implement IDecisionInteractive
 class RuleSkinSensitisationAlerts
           
 class VerifyAlertsSkinSensitisation
           
 

Uses of IDecisionInteractive in toxtree.plugins.smartcyp
 

Classes in toxtree.plugins.smartcyp that implement IDecisionInteractive
 class SMARTCYPPlugin
           
 

Uses of IDecisionInteractive in toxtree.plugins.verhaar2
 

Classes in toxtree.plugins.verhaar2 that implement IDecisionInteractive
 class VerhaarScheme2
          An implementaton of Verhaar scheme for predicting toxicity mode of action.
 

Uses of IDecisionInteractive in toxTree.tree
 

Classes in toxTree.tree that implement IDecisionInteractive
 class UserDefinedTree
          A default decision tree class, implementing IDecisionMethod interface.
 

Uses of IDecisionInteractive in toxTree.tree.cramer
 

Classes in toxTree.tree.cramer that implement IDecisionInteractive
 class CramerRules
          An UserDefinedTree descendant, implementing the decision tree described in "Cramer G.
 

Uses of IDecisionInteractive in toxTree.tree.demo
 

Classes in toxTree.tree.demo that implement IDecisionInteractive
 class SMARTSTree
           
 class SubstructureTree
          A demo decision tree consisting of a single decision rule , which checks for the presence of benzene ring.
 

Uses of IDecisionInteractive in toxTree.tree.rules
 

Classes in toxTree.tree.rules that implement IDecisionInteractive
 class RuleInitAlertCounter
           
 class RuleVerifyAlertsCounter
           
 class RuleVerifyProperty
          Verifies if property is >, < or = to a RuleVerifyProperty.getProperty() value.
 class UserInputRule
           
 

Uses of IDecisionInteractive in verhaar
 

Classes in verhaar that implement IDecisionInteractive
 class VerhaarScheme
          An implementaton of Verhaar scheme for predicting toxicity mode of action.
 

Uses of IDecisionInteractive in verhaar.rules
 

Classes in verhaar.rules that implement IDecisionInteractive
 class RuleAlertsClass1
           
 class RuleAlertsClass2
           
 class RuleAlertsClass3
           
 class RuleVerifyClass1Alerts
           
 class RuleVerifyClass2Alerts
           
 class RuleVerifyClass3Alerts
           
 



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