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Packages that use IDecisionMethod | |
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com.molecularnetworks.start | |
cramer2 | Class CramerRules is the implementation of Cramer rules [Cramer et al,78]. |
eye | Class SicretRules is the implementation of BfR rules for estimating skin irritation and corrosion potential. |
mic | |
michaelacceptors | |
mutant | |
sicret | Class SicretRules is the implementation of BfR rules for estimating skin irritation and corrosion potential. |
toxTree.apps.toxForest | |
toxTree.core | This packages contains only interface definitions, defining essential classes in toxTree application. |
toxtree.data | |
toxTree.io.batch | Batch processing facility. |
toxtree.plugins.dnabinding | |
toxtree.plugins.func | |
toxtree.plugins.kroes | |
toxtree.plugins.lewis | |
toxtree.plugins.moa | |
toxtree.plugins.proteinbinding | |
toxtree.plugins.search | |
toxtree.plugins.skinsensitisation | |
toxtree.plugins.smartcyp | |
toxtree.plugins.verhaar2 | Class toxtree.plugins.verhaar2.VerhaarScheme is the implementation of modified Verhaar structural scheme, according to recommendation from |
toxTree.tree | This packages contains abstract and default classes implementing the interfaces
defined in toxTree.core package. |
toxTree.tree.cramer | Class CramerRules is the implementation of Cramer rules [Cramer et al,78]. |
toxTree.tree.demo | Two simple demo decision trees. |
toxTree.ui | |
toxtree.ui.batch | User interface for toxTree.io.batch |
toxtree.ui.editors | |
toxtree.ui.tree | User interface for viewing and editing a decision tree IDecisionMethod |
toxtree.ui.tree.actions | Actions (derived from AbstractAction for the decision tree user interface
toxTree.ui.tree |
toxtree.ui.wizard | Wizard support. |
verhaar | Class VerhaarScheme is the implementation of Verhaar structural scheme for estimating toxicity mode of action. |
Uses of IDecisionMethod in com.molecularnetworks.start |
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Classes in com.molecularnetworks.start that implement IDecisionMethod | |
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class |
BiodgeradationRules
Wrapper class that knows the biodegradation rules that are available in the toxBiodegradation plugin. |
Uses of IDecisionMethod in cramer2 |
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Classes in cramer2 that implement IDecisionMethod | |
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class |
CramerRulesWithExtensions
TODO update An UserDefinedTree descendant, implementing
the decision tree described in "Cramer G. |
Uses of IDecisionMethod in eye |
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Classes in eye that implement IDecisionMethod | |
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class |
EyeIrritationRules
Decision tree for estimating skin irritation and corrosion potential. |
Uses of IDecisionMethod in mic |
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Classes in mic that implement IDecisionMethod | |
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class |
MICRules
|
Uses of IDecisionMethod in michaelacceptors |
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Classes in michaelacceptors that implement IDecisionMethod | |
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class |
MichaelAcceptorRules
|
Uses of IDecisionMethod in mutant |
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Classes in mutant that implement IDecisionMethod | |
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class |
BB_CarcMutRules
|
Uses of IDecisionMethod in sicret |
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Classes in sicret that implement IDecisionMethod | |
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class |
SicretRules
Decision tree for estimating skin irritation and corrosion potential. |
Uses of IDecisionMethod in toxTree.apps.toxForest |
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Methods in toxTree.apps.toxForest that return IDecisionMethod | |
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IDecisionMethod |
ToxForestDataModule.getRules()
|
Methods in toxTree.apps.toxForest with parameters of type IDecisionMethod | |
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void |
ToxForestDataModule.setRules(IDecisionMethod rules)
|
Uses of IDecisionMethod in toxTree.core |
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Fields in toxTree.core declared as IDecisionMethod | |
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protected IDecisionMethod |
ToxTreeDescriptor.decisionTree
|
Methods in toxTree.core that return IDecisionMethod | |
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IDecisionMethod |
IDecisionMethodEditor.edit(java.awt.Component owner,
IDecisionMethod method)
|
IDecisionMethod |
IDecisionResult.getDecisionMethod()
|
IDecisionMethod |
IDecisionMethodEditor.getMethod()
|
IDecisionMethod |
IDecisionMethodsList.getMethod(int index)
|
static IDecisionMethod |
Introspection.loadRules(java.io.InputStream stream,
java.lang.String newTitle)
Loads a decision tree from an InputStream Uses Java serialization mechanism |
static IDecisionMethod |
Introspection.loadRulesXML(java.io.InputStream stream,
java.lang.String newTitle)
|
Methods in toxTree.core with parameters of type IDecisionMethod | |
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void |
IDecisionMethodsList.addDecisionMethod(IDecisionMethod method)
|
IDecisionMethod |
IDecisionMethodEditor.edit(java.awt.Component owner,
IDecisionMethod method)
|
void |
IProcessRule.init(IDecisionMethod method)
|
java.lang.Object |
IProcessRule.process(IDecisionMethod method,
IDecisionRule rule)
|
static void |
Introspection.saveRulesXML(IDecisionMethod method,
java.io.OutputStream out)
|
void |
IDecisionResult.setDecisionMethod(IDecisionMethod method)
|
void |
IDecisionMethodEditor.setMethod(IDecisionMethod method)
Each method IDecisionMethod should provides an editor, which is a class,
implementing this interface. |
Uses of IDecisionMethod in toxtree.data |
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Fields in toxtree.data declared as IDecisionMethod | |
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protected IDecisionMethod |
DecisionMethodsDataModule.rules
|
Methods in toxtree.data that return IDecisionMethod | |
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IDecisionMethod |
DecisionMethodsDataModule.getRules()
|
IDecisionMethod |
DecisionMethodsDataModule.getSelectedRules()
|
Methods in toxtree.data with parameters of type IDecisionMethod | |
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void |
ToxTreeModule.setRules(IDecisionMethod rules)
|
void |
DecisionMethodsDataModule.setRules(IDecisionMethod rules)
|
void |
DecisionMethodsDataModule.viewMethod(IDecisionMethod method,
boolean editable)
|
abstract void |
DataModule.viewMethod(IDecisionMethod method,
boolean editable)
|
Uses of IDecisionMethod in toxTree.io.batch |
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Fields in toxTree.io.batch declared as IDecisionMethod | |
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protected IDecisionMethod |
ToxTreeBatchProcessing.decisionMethod
|
Methods in toxTree.io.batch that return IDecisionMethod | |
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IDecisionMethod |
ToxTreeBatchProcessing.getDecisionMethod()
|
Methods in toxTree.io.batch with parameters of type IDecisionMethod | |
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void |
ToxTreeBatchProcessing.setDecisionMethod(IDecisionMethod decisionMethod)
|
Uses of IDecisionMethod in toxtree.plugins.dnabinding |
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Classes in toxtree.plugins.dnabinding that implement IDecisionMethod | |
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class |
DNABindingPlugin
Protein binding |
Uses of IDecisionMethod in toxtree.plugins.func |
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Classes in toxtree.plugins.func that implement IDecisionMethod | |
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class |
FuncRules
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Uses of IDecisionMethod in toxtree.plugins.kroes |
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Classes in toxtree.plugins.kroes that implement IDecisionMethod | |
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class |
Kroes1Tree
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Uses of IDecisionMethod in toxtree.plugins.lewis |
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Classes in toxtree.plugins.lewis that implement IDecisionMethod | |
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class |
LewisTree
derived by Weka from table2. |
Uses of IDecisionMethod in toxtree.plugins.moa |
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Classes in toxtree.plugins.moa that implement IDecisionMethod | |
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class |
MOARules
|
Uses of IDecisionMethod in toxtree.plugins.proteinbinding |
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Classes in toxtree.plugins.proteinbinding that implement IDecisionMethod | |
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class |
ProteinBindingPlugin
Protein binding |
Uses of IDecisionMethod in toxtree.plugins.search |
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Classes in toxtree.plugins.search that implement IDecisionMethod | |
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class |
CompoundLookup
|
Uses of IDecisionMethod in toxtree.plugins.skinsensitisation |
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Classes in toxtree.plugins.skinsensitisation that implement IDecisionMethod | |
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class |
SkinSensitisationPlugin
Skin sensitisation |
Uses of IDecisionMethod in toxtree.plugins.smartcyp |
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Classes in toxtree.plugins.smartcyp that implement IDecisionMethod | |
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class |
SMARTCYPPlugin
|
Uses of IDecisionMethod in toxtree.plugins.verhaar2 |
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Classes in toxtree.plugins.verhaar2 that implement IDecisionMethod | |
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class |
VerhaarScheme2
An implementaton of Verhaar scheme for predicting toxicity mode of action. |
Uses of IDecisionMethod in toxTree.tree |
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Classes in toxTree.tree that implement IDecisionMethod | |
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class |
AbstractTree
An astract class, implementing IDecisionMethod interface. |
class |
BatchDecisionResultsList
Encapsulates DecisionResultsList as IDecisionMethod . |
class |
UserDefinedTree
A default decision tree class, implementing IDecisionMethod interface. |
Fields in toxTree.tree declared as IDecisionMethod | |
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protected IDecisionMethod |
TreeResult.decisionMethod
|
Methods in toxTree.tree that return IDecisionMethod | |
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IDecisionMethod |
TreeResult.getDecisionMethod()
|
IDecisionMethod |
BatchDecisionResultsList.getDecisionMethod()
|
IDecisionMethod |
DecisionResultsList.getMethod(int index)
|
IDecisionMethod |
DecisionMethodsList.getMethod(int index)
|
Methods in toxTree.tree with parameters of type IDecisionMethod | |
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void |
DecisionResultsList.addDecisionMethod(IDecisionMethod method)
|
void |
DecisionMethodsList.addDecisionMethod(IDecisionMethod method)
|
void |
Tree2PrefuseGraph.init(IDecisionMethod method)
|
void |
SimpleTreePrinter.init(IDecisionMethod tree)
|
void |
ReportTreePrinter.init(IDecisionMethod tree)
|
void |
PDFTreePrinter.init(IDecisionMethod method)
|
java.lang.Object |
Tree2PrefuseGraph.process(IDecisionMethod method,
IDecisionRule rule)
|
java.lang.Object |
SimpleTreePrinter.process(IDecisionMethod method,
IDecisionRule rule)
|
java.lang.Object |
ReportTreePrinter.process(IDecisionMethod method,
IDecisionRule rule)
|
java.lang.Object |
PDFTreePrinter.process(IDecisionMethod method,
IDecisionRule rule)
|
void |
TreeResult.setDecisionMethod(IDecisionMethod decisionMethod)
|
void |
BatchDecisionResultsList.setDecisionMethod(IDecisionMethod method)
|
prefuse.data.Node |
Tree2PrefuseGraph.walkRules(IDecisionMethod tree)
|
protected prefuse.data.Node |
Tree2PrefuseGraph.walkRules(IDecisionMethod tree,
IDecisionRule rule,
java.util.ArrayList<java.lang.Integer> visited)
|
Uses of IDecisionMethod in toxTree.tree.cramer |
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Classes in toxTree.tree.cramer that implement IDecisionMethod | |
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class |
CramerRules
An UserDefinedTree descendant, implementing
the decision tree described in "Cramer G. |
Uses of IDecisionMethod in toxTree.tree.demo |
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Classes in toxTree.tree.demo that implement IDecisionMethod | |
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class |
SMARTSTree
|
class |
SubstructureTree
A demo decision tree consisting of a single decision rule , which checks for the presence of benzene ring. |
Uses of IDecisionMethod in toxTree.ui |
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Methods in toxTree.ui with parameters of type IDecisionMethod | |
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IDecisionMethodEditor |
IEditorFactory.createTreeEditor(IDecisionMethod method)
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IDecisionMethodEditor |
EditorFactory.createTreeEditor(IDecisionMethod method)
|
javax.swing.JComponent |
IEditorFactory.optionsPanel(IDecisionMethod method,
org.openscience.cdk.interfaces.IAtomContainer atomContainer)
|
javax.swing.JComponent |
EditorFactory.optionsPanel(IDecisionMethod method,
org.openscience.cdk.interfaces.IAtomContainer atomContainer)
|
Uses of IDecisionMethod in toxtree.ui.batch |
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Methods in toxtree.ui.batch that return IDecisionMethod | |
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IDecisionMethod |
BatchProcessingDialog.getDecisionMethod()
|
Methods in toxtree.ui.batch with parameters of type IDecisionMethod | |
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void |
BatchProcessingDialog.setDecisionMethod(IDecisionMethod decisionMethod)
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Uses of IDecisionMethod in toxtree.ui.editors |
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Methods in toxtree.ui.editors with parameters of type IDecisionMethod | |
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IDecisionMethodEditor |
SwingEditorFactory.createTreeEditor(IDecisionMethod method)
|
javax.swing.JComponent |
SwingEditorFactory.optionsPanel(IDecisionMethod method,
org.openscience.cdk.interfaces.IAtomContainer atomContainer)
|
Uses of IDecisionMethod in toxtree.ui.tree |
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Fields in toxtree.ui.tree declared as IDecisionMethod | |
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protected IDecisionMethod |
DecisionTreeModel.decisionMethod
|
protected IDecisionMethod |
TreeLayout.method
|
protected IDecisionMethod |
TreeEditorPanel.method
|
protected IDecisionMethod |
TreePrefuse.tree
|
protected IDecisionMethod |
EditTreeActions.tree
|
Methods in toxtree.ui.tree that return IDecisionMethod | |
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IDecisionMethod |
TreeEditorPanel.edit(java.awt.Component owner,
IDecisionMethod method)
|
IDecisionMethod |
TreePrefuse.getDecisionMethod()
|
IDecisionMethod |
TreeDrawing.getDecisionMethod()
|
IDecisionMethod |
JCustomTreeComponent.getDecisionMethod()
|
IDecisionMethod |
ITreeView.getDecisionMethod()
|
IDecisionMethod |
TreeLayout.getMethod()
|
IDecisionMethod |
TreeEditorPanel.getMethod()
|
static IDecisionMethod |
SelectListDialog.selectNewTree(java.awt.Component parent,
java.lang.ClassLoader classLoader)
Provides a list of names of the classes implementing IDecisionMethod
If the user selects a name, the tree is created and returned Uses Introspection.getAvailableTreeTypes(ClassLoader) |
Methods in toxtree.ui.tree with parameters of type IDecisionMethod | |
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protected void |
TreePanel.addWidgets(IDecisionMethod treeMethod)
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protected void |
TreeFrame.addWidgets(IDecisionMethod treeMethod)
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protected void |
TreeDrawing.addWidgets(IDecisionMethod treeMethod,
EditTreeActions actions)
|
protected int[] |
TreePrefuse.createPalette(IDecisionMethod tree)
|
IDecisionMethod |
TreeEditorPanel.edit(java.awt.Component owner,
IDecisionMethod method)
|
void |
TreePrefuse.setDecisionMethod(IDecisionMethod decisionMethod)
|
void |
TreePanel.setDecisionMethod(IDecisionMethod decisionMethod)
|
void |
TreeFrame.setDecisionMethod(IDecisionMethod decisionMethod)
|
void |
TreeDrawing.setDecisionMethod(IDecisionMethod method)
|
void |
JCustomTreeComponent.setDecisionMethod(IDecisionMethod method)
|
void |
ITreeView.setDecisionMethod(IDecisionMethod decisionMethod)
|
void |
DecisionTreeModel.setDecisionMethod(IDecisionMethod decisionMethod)
|
java.awt.Dimension |
TreeLayout.setMethod(IDecisionMethod method)
|
void |
TreeEditorPanel.setMethod(IDecisionMethod method)
|
Constructors in toxtree.ui.tree with parameters of type IDecisionMethod | |
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DecisionTreeModel(IDecisionMethod decisionMethod)
|
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EditTreeActions(IDecisionMethod tree)
|
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JCustomTreeComponent(IDecisionMethod method,
javax.swing.ActionMap actions)
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TreeDrawing(IDecisionMethod treeMethod,
EditTreeActions actions)
|
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TreeEditorPanel(IDecisionMethod method)
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TreeFrame(IDecisionMethod treeMethod)
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TreeLayout(IDecisionMethod method)
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TreeOptions(IDecisionMethod tree,
org.openscience.cdk.interfaces.IAtomContainer atomcontainer)
|
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TreePanel(IDecisionMethod treeMethod)
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TreePrefuse(IDecisionMethod tree,
EditTreeActions actions)
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TreePrefuse(IDecisionMethod tree,
EditTreeActions actions,
boolean forcefieldLayout)
|
Uses of IDecisionMethod in toxtree.ui.tree.actions |
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Fields in toxtree.ui.tree.actions declared as IDecisionMethod | |
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protected IDecisionMethod |
AbstractTreeAction.tree
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Methods in toxtree.ui.tree.actions that return IDecisionMethod | |
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IDecisionMethod |
ITreeAction.getTree()
|
IDecisionMethod |
AbstractTreeAction.getTree()
|
static IDecisionMethod |
NewRuleAction.treeFromRule(IDecisionRule rule)
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Methods in toxtree.ui.tree.actions with parameters of type IDecisionMethod | |
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void |
SelectTreeAction.addTree(IDecisionMethod tree)
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static DecisionMethodsList |
NewRuleAction.forestFromTree(IDecisionMethod tree)
Creates forest of trees, each tree consists of a single rule. |
void |
EditDecisionMethodAction.launchEditor(IDecisionMethod method)
|
void |
ITreeAction.setTree(IDecisionMethod tree)
|
void |
AbstractTreeAction.setTree(IDecisionMethod tree)
|
static DecisionNode |
NewRuleAction.updateNode(IDecisionMethod tree,
DecisionNode node)
|
Uses of IDecisionMethod in toxtree.ui.wizard |
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Fields in toxtree.ui.wizard declared as IDecisionMethod | |
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protected IDecisionMethod |
DecisionTreeWizard.tree
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Methods in toxtree.ui.wizard with parameters of type IDecisionMethod | |
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static DecisionNodeWizard |
DecisionNodeWizard.createWizard(java.awt.Frame frame,
IDecisionMethod tree,
int start)
|
Constructors in toxtree.ui.wizard with parameters of type IDecisionMethod | |
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DecisionNodeWizard(java.awt.Dialog arg0,
IDecisionMethod tree,
ListPanel[] panels)
|
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DecisionNodeWizard(java.awt.Frame frame,
IDecisionMethod tree,
ListPanel[] panels)
|
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DecisionNodeWizard(IDecisionMethod tree,
ListPanel[] panels)
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DecisionTreeWizard(java.awt.Dialog arg0,
IDecisionMethod tree)
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DecisionTreeWizard(java.awt.Frame frame,
IDecisionMethod tree)
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DecisionTreeWizard(IDecisionMethod tree)
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Uses of IDecisionMethod in verhaar |
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Classes in verhaar that implement IDecisionMethod | |
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class |
VerhaarScheme
An implementaton of Verhaar scheme for predicting toxicity mode of action. |
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