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cramer2.rules.* |
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cramer2.rules.RuleBenzeneAnalogues | ||
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public static final java.lang.String |
smarts |
"[$([aH1;r6]),$([aX2;r6]),$([a;r6]~A)!$(a~A~*)]1~[$([aH1]),$([aX2]),$(a~A)!$(a~A~*)]~[$([aH1]),$([aX2]),$(a~A)!$(a~A~*)]~[$([aH1]),$([aX2]),$(a~A)!$(a~A~*)]~[$([aH1]),$([aX2]),$(a~A)!$(a~A~*)]~[$([aH1]),$([aX2]),$(a~A)!$(a~A~*)]1" |
eye.rules.* |
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eye.rules.Rule15 | ||
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public static final transient java.lang.String |
MSG_15 |
"Derivatives of 2-halogen benzoic acids and corresponding alkali salts" |
eye.rules.Rule16 | ||
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public static final java.lang.String |
MSG16 |
"Halogen benzenes with substituents containing carboxylic acid groups" |
eye.rules.Rule17 | ||
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public static final java.lang.String |
MSG17 |
"Aliphatic esters of chloro formic acid" |
eye.rules.Rule31 | ||
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public static final java.lang.String |
MSG31 |
"Aliphatic alpha hydroesters" |
eye.rules.Rule32 | ||
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public static final java.lang.String |
MSG32 |
"Aliphatic carboxylic acids" |
eye.rules.Rule33 | ||
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public static final java.lang.String |
MSG33 |
"Aromatic ammonium salts" |
eye.rules.Rule34 | ||
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public static final java.lang.String |
MSG34 |
"Substituted benzoic acid halogenides" |
eye.rules.Rule35 | ||
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public static final java.lang.String |
MSG35 |
"Aliphatic iso(thio)cyanates" |
eye.rules.Rule36 | ||
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public static final java.lang.String |
MSG36 |
"Chlorosilanes" |
eye.rules.Rule37 | ||
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public static final java.lang.String |
MSG37 |
"Mixed oxycarboxysilanes" |
eye.rules.Rule38 | ||
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public static final java.lang.String |
MSG38 |
"Aliphatic amines" |
eye.rules.Rule39 | ||
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public static final java.lang.String |
MSG39 |
"Alkali salts of aliphatic alcohols" |
mic.rules.* |
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mic.rules.SA34 | ||
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public static final java.lang.String |
SA34 |
"SA34" |
public static final java.lang.String |
SA34_title |
"H-acceptor-path3-H-acceptor" |
public static final java.lang.String |
smarts |
"[O,o,OH,N,n,$(P=O),$(C=S),$(S=O),$(C=O)]~[A,a]~[A,a]~[O,o,OH,N,n,$(P=O),$(C=S),$(S=O),$(C=O)]" |
sicret.rules.* |
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sicret.rules.RuleAcidAnhydrides | ||
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public static final transient java.lang.String |
MSG_18H |
"Acyclic group" |
sicret.rules.RuleAcrylicAcids | ||
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public static final transient java.lang.String |
MSG_18H |
"Acyclic group" |
sicret.rules.RuleC10_C20AliphaticAlcohols | ||
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public static final transient java.lang.String |
MSG_18H |
"Acyclic group" |
sicret.rules.RuleCarbamoylHalide | ||
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public static final transient java.lang.String |
MSG_18H |
"Acyclic group" |
sicret.rules.RuleDi_Tri_Nitrobenzenes | ||
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public static final transient java.lang.String |
MSG_18H |
"Acyclic group" |
sicret.rules.RuleHalonitrobenzene | ||
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public static final transient java.lang.String |
MSG_18H |
"Acyclic group" |
sicret.rules.RuleOandPQuinones | ||
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public static final transient java.lang.String |
MSG_18H |
"Acyclic group" |
toxTree.apps.* |
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toxTree.apps.toxForest.ToxForestActions | ||
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public static final java.lang.String |
_aEditMethod |
"Edit decision tree" |
public static final java.lang.String |
_aSkipNotImplemented |
"Skip not implemented ruiles" |
public static final java.lang.String |
_CompoundAction |
"Chemical Compounds" |
public static final java.lang.String |
_EditAction |
"Edit" |
public static final java.lang.String |
_FileAction |
"File" |
public static final java.lang.String |
_HazardAction |
"Toxic Hazard" |
toxTree.core.* |
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toxTree.core.IMoleculesIterator | ||
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public static final java.lang.String |
MSG_EMPTYFILE |
"No molecules found! Perhaps the file is empty!" |
public static final java.lang.String |
MSG_ERRORONOPEN |
"Error when reading file\t" |
public static final java.lang.String |
MSG_ERRORONSAVE |
"Error when writing file\t" |
public static final java.lang.String |
MSG_OPENSUCCESS |
"Reading from file successfull\t" |
public static final java.lang.String |
MSG_SAVESUCCESS |
"Writing to file successfull\t" |
public static final java.lang.String |
MSG_UNSUPPORTEDFORMAT |
"Error Unsupported format\t" |
toxTree.core.Introspection | ||
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public static final java.lang.String |
TOXTREE_HOME |
"TOXTREE" |
toxTree.core.XMLSerializable | ||
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public static final java.lang.String |
xmltag_CATEGORIES |
"categories" |
public static final java.lang.String |
xmltag_CATEGORY |
"category" |
public static final java.lang.String |
xmltag_CATEGORYTHRESHOLD |
"threshold" |
public static final java.lang.String |
xmltag_CLASS |
"class" |
public static final java.lang.String |
xmltag_EXPLANATION |
"explanation" |
public static final java.lang.String |
xmltag_ID |
"id" |
public static final java.lang.String |
xmltag_METHOD |
"method" |
public static final java.lang.String |
xmltag_METHODPARAMETER |
"parameter" |
public static final java.lang.String |
xmltag_METHODS |
"methods" |
public static final java.lang.String |
xmltag_NAME |
"name" |
public static final java.lang.String |
xmltag_RULE |
"rule" |
public static final java.lang.String |
xmltag_RULEEXAMPLE |
"example" |
public static final java.lang.String |
xmltag_RULES |
"rules" |
public static final java.lang.String |
xmltag_TREEROOT |
"root" |
toxtree.data.* |
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toxtree.data.ActionList | ||
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public static final java.lang.String |
_CHILDREN |
"CHILDREN" |
public static final java.lang.String |
_MNEMONICID |
"MNEMONIC" |
public static final java.lang.String |
_TYPEID |
"TYPE" |
toxtree.data.ToxTreeActions | ||
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public static final java.lang.String |
_aEditMethod |
"Edit decision tree" |
public static final java.lang.String |
_aSkipNotImplemented |
"Skip not implemented ruiles" |
public static final java.lang.String |
_CompoundAction |
"Chemical Compounds" |
public static final java.lang.String |
_EditAction |
"Edit" |
public static final java.lang.String |
_FileAction |
"File" |
public static final java.lang.String |
_HazardAction |
"Toxic Hazard" |
toxTree.exceptions.* |
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toxTree.exceptions.DecisionResultUIDException | ||
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public static final java.lang.String |
_mismatchMessage |
"Serial Version UID mismatch! " |
toxTree.exceptions.DesisionMethodUIDException | ||
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public static final java.lang.String |
_mismatchMessage |
"Serial Version UID mismatch! " |
toxTree.exceptions.DRuleNotImplemented | ||
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protected static final java.lang.String |
_MESSAGE |
"Rule not implemented!\t" |
toxTree.io.* |
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toxTree.io.batch.BatchProcessing | ||
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public static final transient int |
STATUS_ABORTED |
4 |
public static final transient int |
STATUS_FINISHED |
2 |
public static final transient int |
STATUS_NOTINITIALIZED |
5 |
public static final transient int |
STATUS_NOTSTARTED |
0 |
public static final transient int |
STATUS_PAUSED |
3 |
public static final transient int |
STATUS_RUNNING |
1 |
toxTree.logging.* |
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toxTree.logging.TTLogger | ||
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public final int |
DEFAULT_STACK_LENGTH |
5 |
toxtree.plugins.* |
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toxtree.plugins.moa.categories.CategoryAcetylcholinesteraseInhibitors | ||
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protected static final java.lang.String |
title |
"Acetylcholinesterase Inhibitors" |
toxtree.plugins.moa.categories.CategoryCentralNervousSystemSeizureAgents | ||
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protected static final java.lang.String |
title |
"Category Central Nervous System Seizure Agents" |
toxtree.plugins.moa.categories.CategoryElectrophileProelectrophileReactivity | ||
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protected static final java.lang.String |
title |
"Electrophile / Proelectrophile Reactivity" |
toxtree.plugins.moa.categories.CategoryOxidativePhosphorylationUncouplers | ||
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protected static final java.lang.String |
title |
"Oxidative phosphorylation uncoupling" |
toxtree.plugins.moa.categories.CategoryUnknown | ||
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protected static final java.lang.String |
title |
"Unknown" |
toxtree.plugins.smartcyp.SMARTCypTreeResult | ||
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public static final java.lang.String |
FORMAT |
"SMARTCyp.Rank%s%d.%s" |
toxTree.query.* |
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toxTree.query.FunctionalGroups | ||
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public static final java.lang.String |
ACETAL |
"acetal" |
public static final java.lang.String |
ACETYLENIC |
"acetylenic" |
public static final java.lang.String |
ALCOHOL |
"alcohol" |
public static final java.lang.String |
ALDEHYDE |
"aldehyde" |
public static final java.lang.String |
ALLOCATED |
"ALLOCATED" |
public static final java.lang.String |
ANHYDRIDE |
"ANHYDRIDE" |
public static final java.lang.String |
AROMATIC_AMINE |
"aromatic amine" |
public static final java.lang.String |
AROMATIC_N_OXIDE |
"Aromatic ring N oxide" |
public static final java.lang.String |
C |
"C" |
public static final java.lang.String |
CARBONATE |
"CARBONATE" |
public static final java.lang.String |
CARBONYL |
"carbonyl" |
public static final java.lang.String |
CARBONYL_ABUNSATURATED |
"CARBONYL_ABUNSATURATED" |
public static final java.lang.String |
CARBOXYLIC_ACID |
"carboxylic acid" |
public static final java.lang.String |
CARBOXYLIC_ACID_SALT |
"carboxylic acid salt" |
public static final java.lang.String |
CH |
"CH" |
public static final java.lang.String |
CH2 |
"CH2" |
public static final java.lang.String |
CH3 |
"CH3" |
public static final java.lang.String |
CYANO |
"cyano" |
public static final java.lang.String |
CYCLIC_DIESTER |
"cyclic diester" |
public static final java.lang.String |
DIAZO |
"diazo" |
public static final java.lang.String |
DONTMARK |
"DONTMARK" |
public static final java.lang.String |
ESTER |
"ester" |
public static final java.lang.String |
ETHER |
"ether" |
public static final java.lang.String |
HYDROCARBON |
"hydrocarbon" |
public static final java.lang.String |
HYDROCHLORIDE_OF_AMINE |
"hydrochloride of amine" |
public static final java.lang.String |
HYDROXY |
"hydroxy" |
public static final java.lang.String |
HYDROXY1 |
"1\'hydroxy" |
public static final java.lang.String |
HYDROXYESTERSUBSTITED |
"hydroxy ester substituted" |
public static final java.lang.String |
ISOPRENE |
"isoprene unit" |
public static final java.lang.String |
KETONE |
"ketone" |
public static final java.lang.String |
KETONE_SIDECHAIN |
"ketone_sidechain" |
public static final java.lang.String |
LACTONE |
"lactone" |
public static final java.lang.String |
MERCAPTAN |
"mercaptan" |
public static final java.lang.String |
METHOXY |
"methoxy" |
public static final java.lang.String |
METHYLETHER |
"methylether" |
public static final java.lang.String |
MSG_HASGROUP |
"\thas group \t" |
public static final java.lang.String |
MSG_MOLECULEIS |
"Molecule is\t" |
public static final java.lang.String |
NITRO |
"nitro" |
public static final java.lang.String |
NNITROSO |
"N-nitroso" |
public static final java.lang.String |
PHOSPHATE |
"phosphate" |
public static final java.lang.String |
POLYOXYETHYLENE |
"polyoxyethylene" |
public static final java.lang.String |
PRIMARY_AMINE |
"Primary amine" |
public static final java.lang.String |
QUATERNARY_NITROGEN |
"quaternary nitrogen" |
public static final java.lang.String |
QUATERNARY_NITROGEN_EXCEPTION |
"quaternary nitrogen exception" |
public static final java.lang.String |
RING_NUMBERING |
"RingNumbering" |
public static final java.lang.String |
SECONDARY_AMINE |
"Secondary amine" |
public static final java.lang.String |
SECONDARY_AMINE_ALIPHATIC |
"Aliphatic Secondary amine" |
public static final java.lang.String |
SULPHAMATE |
"sulphamate" |
public static final java.lang.String |
SULPHATE |
"sulphate" |
public static final java.lang.String |
SULPHATE_OF_AMINE |
"sulphate of amine" |
public static final java.lang.String |
SULPHIDE |
"sulphide" |
public static final java.lang.String |
SULPHONATE |
"sulphonate" |
public static final java.lang.String |
TERTIARY_AMINE |
"tertiary amine" |
public static final java.lang.String |
THIOESTER |
"thioester" |
public static final java.lang.String |
TRIAZENO |
"triazeno" |
toxTree.query.MolAnalyser | ||
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public static final java.lang.String |
HETEROAROMATIC |
"Heteroaromatic" |
public static final java.lang.String |
HETEROCYCLIC |
"Heterocyclic" |
public static final java.lang.String |
HETEROCYCLIC3 |
"3-membered heterocyclic" |
toxTree.query.MolFlags | ||
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public static final java.lang.String |
MOLFLAGS |
"CRAMERFLAGS" |
public static final java.lang.String |
PARENT |
"PARENT" |
toxTree.tree.* |
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toxTree.tree.ProgressStatus | ||
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public static final transient java.lang.String |
_eError |
"ERROR: \t" |
public static final transient java.lang.String |
_eMethodNotAssigned |
"Decision method not assigned!" |
public static final transient java.lang.String |
_eResultIsEstimating |
"Decision method is being applied now ...!" |
public static final transient java.lang.String |
_eResultNotEstimated |
"Decision method has not been applied yet!" |
public static final transient java.lang.String |
_eUnknownState |
"Unknown state !\t" |
public static final transient java.lang.String |
_pClassID |
"ClassID" |
public static final transient java.lang.String |
_pDecisionMethod |
"DecisionMethod" |
public static final transient java.lang.String |
_pRuleResult |
"RuleResult" |
toxTree.tree.RuleResult | ||
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public static final java.lang.String |
prefix |
"http://localhost" |
protected static final java.lang.String |
wwwAlertFormat |
"<a href=\'#\' onClick=\"changeImage(\'compound_uri\',\'%s/hilight?parameters=%s\')\">%s.%s</a>" |
toxTree.tree.Tree2PrefuseGraph | ||
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public static final java.lang.String |
FIELD_ANSWER |
"answer" |
public static final java.lang.String |
FIELD_CATEGORY |
"category" |
public static final java.lang.String |
FIELD_EXPLANATION |
"explanation" |
public static final java.lang.String |
FIELD_ID |
"id" |
public static final java.lang.String |
FIELD_NAME |
"name" |
public static final java.lang.String |
FIELD_NODETYPE |
"nodetype" |
public static final java.lang.String |
FIELD_RULE |
"rule" |
public static final java.lang.String |
FIELD_SHORT_NAME |
"short" |
toxTree.tree.cramer.RuleKetoneAlcoholEtc | ||
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public static final transient java.lang.String |
MSG_18H |
"Acyclic aliphatic ketone,ketal or ketoalcohol with >=4 carbons on either side of the keto group\t" |
toxTree.tree.cramer.RuleSomeBenzeneDerivatives | ||
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public static final transient java.lang.String |
MSG_ALKOXYPARACH |
"Alkoxy group para to hydrocarbon chain susbtituent\t" |
public static final transient java.lang.String |
MSG_BENZENESUBSTITUENT |
"Benzene substituent found:\t" |
toxTree.tree.rules.RuleElements | ||
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public static final int |
modeAllSpecifiedElements |
1 |
public static final int |
modeAnySpecifiedElements |
2 |
public static final int |
modeOnlySpecifiedElements |
0 |
toxTree.tree.rules.smarts.Convertor | ||
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public static final int |
COORDINATES_2D |
2 |
public static final int |
COORDINATES_3D |
3 |
toxtree.ui.* |
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toxtree.ui.actions.ClearResultAction | ||
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public static final java.lang.String |
_aClearResults |
"Clear results" |
toxtree.ui.actions.EditCompoundAction | ||
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public static final java.lang.String |
_aEditCompound |
"Edit compound" |
toxtree.ui.actions.EstimateAction | ||
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public static final java.lang.String |
_aEstimate |
"Estimate" |
toxtree.ui.actions.EstimateAllAction | ||
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public static final java.lang.String |
_aEstimateAll |
"Estimate all" |
toxtree.ui.actions.ExplainAction | ||
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public static final java.lang.String |
_aExplain |
"Explain" |
toxtree.ui.tree.EditTreeActions | ||
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public static final java.lang.String |
ACTION_EDITCATEGORY |
"Edit category" |
public static final java.lang.String |
ACTION_EDITRULE |
"Edit rule" |
public static final java.lang.String |
ACTION_MODIFYEXPLANATION |
"Modify explanation" |
public static final java.lang.String |
ACTION_MODIFYNOBRANCH |
"ModifyNoBranch" |
public static final java.lang.String |
ACTION_MODIFYNOCATEGORY |
"ModifyNoCategory" |
public static final java.lang.String |
ACTION_MODIFYNODE |
"Edit rule" |
public static final java.lang.String |
ACTION_MODIFYYESBRANCH |
"ModifyYesBranch" |
public static final java.lang.String |
ACTION_MODIFYYESCATEGORY |
"ModifyYesCategory" |
public static final java.lang.String |
ACTION_NEWCATEGORY |
"Select from list" |
public static final java.lang.String |
ACTION_NEWRULE |
"New rule" |
public static final java.lang.String |
ACTION_VERIFY |
"Delete rule" |
public static final java.lang.String |
ACTION_VERIFYUNUSED |
"Remove unused" |
toxtree.ui.tree.TreePrefuse | ||
---|---|---|
public static final java.lang.String |
EDGES |
"graph.edges" |
public static final java.lang.String |
GRAPH |
"graph" |
public static final java.lang.String |
NODES |
"graph.nodes" |
toxtree.ui.tree.actions.LoadAndEditTreeAction | ||
---|---|---|
public static final java.lang.String |
_aEditMethod |
"Load from file" |
toxtree.ui.tree.actions.NewTreeAction | ||
---|---|---|
public static final java.lang.String |
_aNewMethod |
"New decision tree" |
toxtree.ui.tree.actions.SelectAndEditTreeAction | ||
---|---|---|
public static final java.lang.String |
_aEditMethod |
"Select from list" |
toxtree.ui.tree.actions.SelectTreeAction | ||
---|---|---|
public static final java.lang.String |
_aSelectMethod |
"Select a decision tree" |
toxtree.ui.tree.actions.ViewTreeAction | ||
---|---|---|
public static final java.lang.String |
_aViewMethod |
"View decision tree" |
verhaar.query.* |
---|
verhaar.query.FunctionalGroups | ||
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public static final java.lang.String |
ANILINE |
"ANILINE" |
public static final java.lang.String |
AZARIDINE |
"AZARIDINE" |
public static final java.lang.String |
BENZYLALCOHOL |
"BENZYLALCOHOL" |
public static final java.lang.String |
CYCLICESTER |
"CYCLICESTER" |
public static final java.lang.String |
EPOXIDE |
"EPOXIDE" |
public static final java.lang.String |
HALOGEN |
"HALOGEN" |
public static final java.lang.String |
HALOGEN_ALPHA_FROM_UNSATURATION |
"HALOGEN_ALPHA_FROM_UNSATURATION" |
public static final java.lang.String |
HALOGEN_BETA_FROM_UNSATURATION |
"HALOGEN_BETA_FROM_UNSATURATION" |
public static final java.lang.String |
IONICGROUP |
"IONICGROUP" |
public static final java.lang.String |
KETONE_A_B_UNSATURATED |
"KETONE_A_B_UNSATURATED" |
public static final java.lang.String |
n |
"n" |
public static final java.lang.String |
PEROXIDE |
"PEROXIDE" |
public static final java.lang.String |
PHENOL |
"PHENOL" |
public static final java.lang.String |
PYRIDINE |
"PYRIDINE" |
public static final java.lang.String |
RINGSUBSTITUTED |
"RINGSUBSTITUTED" |
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