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java.lang.Objectjava.util.Observable
toxTree.tree.AbstractRule
toxtree.plugins.search.rules.Find
public class Find
Compound lookup
Field Summary | |
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protected ambit2.base.processors.search.AbstractFinder.MODE |
mode
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protected ambit2.base.data.Template |
profile
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protected ambit2.base.processors.search.AbstractFinder.SITE |
searchSite
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Fields inherited from class toxTree.tree.AbstractRule |
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changes, editable, ERR_STRUCTURENOTPREPROCESSED, examples, explanation, id, logger, MSG_NO, MSG_YES, no, residueIDHidden, title |
Fields inherited from interface toxTree.core.XMLSerializable |
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xmltag_CATEGORIES, xmltag_CATEGORY, xmltag_CATEGORYTHRESHOLD, xmltag_CLASS, xmltag_EXPLANATION, xmltag_ID, xmltag_METHOD, xmltag_METHODPARAMETER, xmltag_METHODS, xmltag_NAME, xmltag_RULE, xmltag_RULEEXAMPLE, xmltag_RULES, xmltag_TREEROOT |
Constructor Summary | |
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Find()
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Method Summary | |
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protected ambit2.base.interfaces.IProcessor |
configure(ambit2.base.data.Template profile)
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boolean |
verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol)
This is the core of a IDecisionRule behaviour. |
Methods inherited from class toxTree.tree.AbstractRule |
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addPropertyChangeListener, clearFlags, clone, createRule, equals, fromXML, getEditor, getExampleMolecule, getExamples, getExplanation, getID, getNum, getSelector, getTitle, hideResiduesID, isEditable, isImplemented, isResidueIDHidden, log, log, log, makeMolecule, removePropertyChangeListener, setEditable, setExampleMolecule, setExamples, setExplanation, setID, setNum, setTitle, toShallowXML, toString, toXML |
Methods inherited from class java.util.Observable |
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addObserver, clearChanged, countObservers, deleteObserver, deleteObservers, hasChanged, notifyObservers, notifyObservers, setChanged |
Methods inherited from class java.lang.Object |
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finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Field Detail |
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protected ambit2.base.processors.search.AbstractFinder.SITE searchSite
protected ambit2.base.processors.search.AbstractFinder.MODE mode
protected ambit2.base.data.Template profile
Constructor Detail |
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public Find()
Method Detail |
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public boolean verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol) throws DecisionMethodException
IDecisionRule
IDecisionRule
behaviour. The method returns true
if the answer of the rule is YES for the analyzed molecule org.openscience.cdk.interfaces.AtomContainer
and FALSE
if the answer of the rule is NO for the analyzed molecule org.openscience.cdk.interfaces.AtomContainer
??
mol
- org.openscience.cdk.interfaces.AtomContainer
DecisionMethodException
protected ambit2.base.interfaces.IProcessor configure(ambit2.base.data.Template profile)
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