toxTree.tree.demo
Class SubstructureTree

java.lang.Object
  extended by java.util.Observable
      extended by toxTree.tree.AbstractTree
          extended by toxTree.tree.UserDefinedTree
              extended by toxTree.tree.demo.SubstructureTree
All Implemented Interfaces:
ambit2.core.data.IStructureDiagramHighlights, java.io.Serializable, java.lang.Cloneable, java.util.Observer, org.openscience.cdk.qsar.IDescriptor, org.openscience.cdk.qsar.IMolecularDescriptor, IDecisionInteractive, IDecisionMethod, IDecisionMethodPrority, XMLSerializable

public class SubstructureTree
extends UserDefinedTree

A demo decision tree consisting of a single decision rule , which checks for the presence of benzene ring. Serves as an illustration of the concept of user-defined tree.

Author:
Nina Jeliazkova
Modified 2005-8-5
See Also:
Serialized Form

Nested Class Summary
 
Nested classes/interfaces inherited from interface toxTree.core.IDecisionInteractive
IDecisionInteractive.UserOptions
 
Field Summary
 
Fields inherited from class toxTree.tree.UserDefinedTree
editable, listener, nodesFactory, options
 
Fields inherited from class toxTree.tree.AbstractTree
categories, changes, explanation, falseIfRuleNotImplemented, imageSize, logger, modified, name, priority, rules, treeRoot, web
 
Fields inherited from interface toxTree.core.XMLSerializable
xmltag_CATEGORIES, xmltag_CATEGORY, xmltag_CATEGORYTHRESHOLD, xmltag_CLASS, xmltag_EXPLANATION, xmltag_ID, xmltag_METHOD, xmltag_METHODPARAMETER, xmltag_METHODS, xmltag_NAME, xmltag_RULE, xmltag_RULEEXAMPLE, xmltag_RULES, xmltag_TREEROOT
 
Constructor Summary
SubstructureTree()
           
 
Method Summary
 
Methods inherited from class toxTree.tree.UserDefinedTree
calculate, clone, createArrayResult, getBranch, getBranch, getCategory, getCategory, getDescriptorNames, getDescriptorResultType, getInteractive, getListener, getNodesFactory, getOptions, getParameterNames, getParameters, getParameterType, getRule, getSpecification, hasUnreachableRules, hasUnusedCategories, initRules, isEditable, removeListener, setArrayValue, setEditable, setInteractive, setListener, setNodesFactory, setOptions, setParameters, setParameters, setTransitions, toString, verifyRules, visitCategories, visitRules
 
Methods inherited from class toxTree.tree.AbstractTree
addDecisionRule, addPropertyChangeListener, classify, clearChanged, createDecisionResult, equals, explainRules, fromXML, getCategories, getEditor, getExplanation, getImage, getImage, getImageSize, getLegend, getNumberOfClasses, getNumberOfRules, getPriority, getRule, getRules, getTitle, getTopRule, isFalseIfRuleNotImplemented, isModified, isWeb, optionsPanel, printResults, printToStream, removePropertyChangeListener, retrieveExplanation, setCategories, setChanged, setDecisionRule, setExplanation, setFalseIfRuleNotImplemented, setImageSize, setModified, setPriority, setRules, setRules, setTitle, setWeb, testRulesWithSelector, toShallowXML, toXML, update, verifyResidues, verifyRules, walkRules, walkRules
 
Methods inherited from class java.util.Observable
addObserver, countObservers, deleteObserver, deleteObservers, hasChanged, notifyObservers, notifyObservers
 
Methods inherited from class java.lang.Object
finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Constructor Detail

SubstructureTree

public SubstructureTree()
                 throws DecisionMethodException
Throws:
DecisionMethodException


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