toxTree.tree.cramer
Class RuleRingComplexSubstituents30
java.lang.Object
java.util.Observable
toxTree.tree.AbstractRule
toxTree.tree.AbstractRuleHilightHits
toxTree.tree.rules.RuleSubstructures
toxTree.tree.rules.RuleRings
toxTree.tree.rules.RuleRingSubstituents
toxTree.tree.rules.RuleRingOtherThanAllowedSubstituents
toxTree.tree.cramer.RuleRingComplexSubstituents30
- All Implemented Interfaces:
- java.io.Serializable, java.lang.Cloneable, IDecisionRule, IRuleSubstructures, XMLSerializable
- Direct Known Subclasses:
- RuleAcyclicAcetalEsterOfQ30
public class RuleRingComplexSubstituents30
- extends RuleRingOtherThanAllowedSubstituents
Rule 30 of the Cramer scheme (see CramerRules
)
- Version:
- 0.1, 2005-5-3
- Author:
- Nina Jeliazkova
- See Also:
- Serialized Form
Field Summary |
protected org.openscience.cdk.isomorphism.matchers.QueryAtomContainer |
ester
|
Fields inherited from class toxTree.tree.AbstractRule |
changes, editable, ERR_STRUCTURENOTPREPROCESSED, examples, explanation, id, logger, MSG_NO, MSG_YES, no, residueIDHidden, title |
Fields inherited from interface toxTree.core.XMLSerializable |
xmltag_CATEGORIES, xmltag_CATEGORY, xmltag_CATEGORYTHRESHOLD, xmltag_CLASS, xmltag_EXPLANATION, xmltag_ID, xmltag_METHOD, xmltag_METHODPARAMETER, xmltag_METHODS, xmltag_NAME, xmltag_RULE, xmltag_RULEEXAMPLE, xmltag_RULES, xmltag_TREEROOT |
Method Summary |
boolean |
substituentIsAllowed(org.openscience.cdk.interfaces.IAtomContainer a,
int[] place)
returns true if the substituent is allowed and false if it is forbidden
to be implemented by the inheriting class |
boolean |
verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol)
return true if other than listed substructures are found in a ring substituent |
boolean |
verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol,
org.openscience.cdk.interfaces.IAtomContainer selected)
|
Methods inherited from class toxTree.tree.rules.RuleSubstructures |
addSubstructure, clearSubstructures, equals, getIds, getQuery, getSubstructure, getSubstructures, getSubstructuresCount, removeSubstructure, setIds, setQuery, setSubstructure |
Methods inherited from class toxTree.tree.AbstractRule |
addPropertyChangeListener, clearFlags, clone, createRule, fromXML, getEditor, getExampleMolecule, getExamples, getExplanation, getID, getNum, getTitle, hideResiduesID, isEditable, isResidueIDHidden, log, log, log, makeMolecule, removePropertyChangeListener, setEditable, setExampleMolecule, setExamples, setExplanation, setID, setNum, setTitle, toShallowXML, toString, toXML |
Methods inherited from class java.util.Observable |
addObserver, clearChanged, countObservers, deleteObserver, deleteObservers, hasChanged, notifyObservers, notifyObservers, setChanged |
Methods inherited from class java.lang.Object |
finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Methods inherited from interface toxTree.core.IDecisionRule |
addPropertyChangeListener, clearFlags, clone, getEditor, getExampleMolecule, getExplanation, getID, getNum, getSelector, getTitle, hideResiduesID, isEditable, isResidueIDHidden, removePropertyChangeListener, setEditable, setExampleMolecule, setExplanation, setID, setNum, setTitle, toString |
ester
protected org.openscience.cdk.isomorphism.matchers.QueryAtomContainer ester
RuleRingComplexSubstituents30
public RuleRingComplexSubstituents30()
- Constructor
substituentIsAllowed
public boolean substituentIsAllowed(org.openscience.cdk.interfaces.IAtomContainer a,
int[] place)
throws DecisionMethodException
- Description copied from class:
RuleRingSubstituents
- returns true if the substituent is allowed and false if it is forbidden
to be implemented by the inheriting class
- Specified by:
substituentIsAllowed
in class RuleRingSubstituents
- Throws:
DecisionMethodException
verifyRule
public boolean verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol)
throws DecisionMethodException
- Description copied from class:
RuleRingOtherThanAllowedSubstituents
- return true if other than listed substructures are found in a ring substituent
- Specified by:
verifyRule
in interface IDecisionRule
- Overrides:
verifyRule
in class RuleRingOtherThanAllowedSubstituents
- Parameters:
mol
- org.openscience.cdk.interfaces.AtomContainer
- Returns:
- rule result, boolean
- Throws:
DecisionMethodException
- See Also:
IDecisionRule.verifyRule(IAtomContainer)
verifyRule
public boolean verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol,
org.openscience.cdk.interfaces.IAtomContainer selected)
throws DecisionMethodException
- Overrides:
verifyRule
in class RuleRingOtherThanAllowedSubstituents
- Throws:
DecisionMethodException
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