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Packages that use toxTree.tree.rules | |
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cramer2.rules | |
eye.rules | The package contains implementations of IDecisionRule
rules for SicretRules decision tree. |
mic.rules | |
michaelacceptors.rules | |
mutant.rules | |
sicret.rules | The package contains implementations of IDecisionRule
rules for SicretRules decision tree. |
toxTree.tree.cramer | Class CramerRules is the implementation of Cramer rules [Cramer et al,78]. |
toxTree.tree.rules | The package contains several generic implementations of IDecisionRule rules |
toxtree.plugins.dnabinding.rules | |
toxtree.plugins.func.rules | |
toxtree.plugins.kroes.rules | |
toxtree.plugins.lewis.rules | |
toxtree.plugins.moa.rules | |
toxtree.plugins.proteinbinding.rules | |
toxtree.plugins.skinsensitisation.rules | |
toxtree.tree.rules | |
toxtree.ui | Base classes for ToxTreeApp user interface |
toxtree.ui.editors | |
toxtree.ui.tree.rules | |
verhaar.rules | The package contains implementations of IDecisionRule
rules for VerhaarScheme decision tree. |
verhaar.rules.helper |
Classes in toxTree.tree.rules used by cramer2.rules | |
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RuleReadilyHydrolised
Verifies if a compound is readily hydrolised |
Classes in toxTree.tree.rules used by eye.rules | |
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RuleVerifyProperty
Verifies if property is >, < or = to a RuleVerifyProperty.getProperty() value. |
Classes in toxTree.tree.rules used by mic.rules | |
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IAlertCounter
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RuleAnySubstructure
Verifies if the molecule has at least one substructure of the list |
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RuleAromatic
Verifies if the molecule is aromatic by applying the Hueckel rule |
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RuleInitAlertCounter
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RuleSubstructures
An abstract class to implement substructure rules |
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RuleVerifyProperty
Verifies if property is >, < or = to a RuleVerifyProperty.getProperty() value. |
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StructureAlert
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StructureAlertCDK
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Classes in toxTree.tree.rules used by michaelacceptors.rules | |
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IAlertCounter
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StructureAlertAmbit
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Classes in toxTree.tree.rules used by mutant.rules | |
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IAlertCounter
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RuleAromatic
Verifies if the molecule is aromatic by applying the Hueckel rule |
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RuleInitAlertCounter
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RuleRings
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RuleRingSubstituents
A rule to analyze ring substituents |
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RuleSubstructures
An abstract class to implement substructure rules |
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RuleVerifyAlertsCounter
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RuleVerifyProperty
Verifies if property is >, < or = to a RuleVerifyProperty.getProperty() value. |
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StructureAlert
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StructureAlertAmbit
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StructureAlertCDK
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UserInputRule
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Classes in toxTree.tree.rules used by sicret.rules | |
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RuleAllAllowedElements
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RuleAllSubstructures
Verifies if all of the fragments are a substructure of moleclue |
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RuleAnySubstructure
Verifies if the molecule has at least one substructure of the list |
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RuleElements
Verifies if the molecule consists of only allowed elements |
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RuleSubstructures
An abstract class to implement substructure rules |
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RuleVerifyProperty
Verifies if property is >, < or = to a RuleVerifyProperty.getProperty() value. |
Classes in toxTree.tree.rules used by toxTree.tree.cramer | |
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RuleAnySubstituents
Verifies if the molecule consists of only allowed substituents |
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RuleAnySubstructure
Verifies if the molecule has at least one substructure of the list |
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RuleAromatic
Verifies if the molecule is aromatic by applying the Hueckel rule |
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RuleCarbohydrate
Verifies if the molecule is a carbohydrate |
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RuleCommonTerpene
Verifies if the molecule is a common terpene |
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RuleElements
Verifies if the molecule consists of only allowed elements |
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RuleHeterocyclic
Verifies if the molecule is heterocyclic |
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RuleManyAromaticRings
Verifies if there are many aromatic rings |
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RuleOnlyAllowedSubstructures
Verifies if the structure contains only allowed substructures |
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RuleOpenChain
Verifies if the moleucle is open chain |
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RuleReadilyHydrolised
Verifies if a compound is readily hydrolised |
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RuleRingAllowedSubstituents
A rule to analyze ring substituents |
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RuleRingOtherThanAllowedSubstituents
A rule to analyze ring substituents |
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RuleRings
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RuleRingSubstituents
A rule to analyze ring substituents |
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RuleStructuresList
A rule, which returns true if the query is isomorphic to one of the structures read from a preconfigured file of a type SDF, SMI, CSV |
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RuleSubstructures
An abstract class to implement substructure rules |
Classes in toxTree.tree.rules used by toxTree.tree.rules | |
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IAlertCounter
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ILookupFile
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RuleDescriptor
An abstract class to allow for descriptor analysis |
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RuleDescriptorRange
Verifies if the descriptor is within a range |
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RuleElements
Verifies if the molecule consists of only allowed elements |
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RuleInitAlertCounter
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RuleRings
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RuleRingSubstituents
A rule to analyze ring substituents |
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RuleSubstructures
An abstract class to implement substructure rules |
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RuleVerifyProperty
Verifies if property is >, < or = to a RuleVerifyProperty.getProperty() value. |
Classes in toxTree.tree.rules used by toxtree.plugins.dnabinding.rules | |
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IAlertCounter
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RuleInitAlertCounter
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RuleVerifyAlertsCounter
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RuleVerifyProperty
Verifies if property is >, < or = to a RuleVerifyProperty.getProperty() value. |
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StructureAlert
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Classes in toxTree.tree.rules used by toxtree.plugins.func.rules | |
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IAlertCounter
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RuleInitAlertCounter
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RuleVerifyProperty
Verifies if property is >, < or = to a RuleVerifyProperty.getProperty() value. |
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StructureAlert
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StructureAlertCDK
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Classes in toxTree.tree.rules used by toxtree.plugins.kroes.rules | |
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RuleInitAlertCounter
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RuleSubstructures
An abstract class to implement substructure rules |
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RuleVerifyAlertsCounter
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RuleVerifyProperty
Verifies if property is >, < or = to a RuleVerifyProperty.getProperty() value. |
Classes in toxTree.tree.rules used by toxtree.plugins.lewis.rules | |
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RuleDescriptor
An abstract class to allow for descriptor analysis |
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RuleDescriptorRange
Verifies if the descriptor is within a range |
Classes in toxTree.tree.rules used by toxtree.plugins.moa.rules | |
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RuleInitAlertCounter
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RuleVerifyAlertsCounter
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RuleVerifyProperty
Verifies if property is >, < or = to a RuleVerifyProperty.getProperty() value. |
Classes in toxTree.tree.rules used by toxtree.plugins.proteinbinding.rules | |
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IAlertCounter
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RuleInitAlertCounter
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RuleVerifyAlertsCounter
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RuleVerifyProperty
Verifies if property is >, < or = to a RuleVerifyProperty.getProperty() value. |
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StructureAlert
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Classes in toxTree.tree.rules used by toxtree.plugins.skinsensitisation.rules | |
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IAlertCounter
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RuleInitAlertCounter
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RuleVerifyAlertsCounter
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RuleVerifyProperty
Verifies if property is >, < or = to a RuleVerifyProperty.getProperty() value. |
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StructureAlert
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Classes in toxTree.tree.rules used by toxtree.tree.rules | |
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UserInputRule
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Classes in toxTree.tree.rules used by toxtree.ui | |
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RuleVerifyProperty
Verifies if property is >, < or = to a RuleVerifyProperty.getProperty() value. |
Classes in toxTree.tree.rules used by toxtree.ui.editors | |
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RuleDescriptorRange
Verifies if the descriptor is within a range |
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RuleManyAromaticRings
Verifies if there are many aromatic rings |
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RuleMolecularMassRange
Molecular mass in [ RuleDescriptorRange.getMinValue() ,RuleDescriptorRange.getMaxValue() ]
TODO add description |
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RuleStructuresList
A rule, which returns true if the query is isomorphic to one of the structures read from a preconfigured file of a type SDF, SMI, CSV |
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RuleSubstructures
An abstract class to implement substructure rules |
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RuleVerifyProperty
Verifies if property is >, < or = to a RuleVerifyProperty.getProperty() value. |
Classes in toxTree.tree.rules used by toxtree.ui.tree.rules | |
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RuleStructuresList
A rule, which returns true if the query is isomorphic to one of the structures read from a preconfigured file of a type SDF, SMI, CSV |
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RuleVerifyProperty
Verifies if property is >, < or = to a RuleVerifyProperty.getProperty() value. |
Classes in toxTree.tree.rules used by verhaar.rules | |
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IAlertCounter
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RuleDescriptor
An abstract class to allow for descriptor analysis |
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RuleDescriptorRange
Verifies if the descriptor is within a range |
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RuleElements
Verifies if the molecule consists of only allowed elements |
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RuleInitAlertCounter
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RuleMolecularMassRange
Molecular mass in [ RuleDescriptorRange.getMinValue() ,RuleDescriptorRange.getMaxValue() ]
TODO add description |
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RuleOnlyAllowedSubstructures
Verifies if the structure contains only allowed substructures |
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RuleOpenChain
Verifies if the moleucle is open chain |
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RuleRingAllowedSubstituents
A rule to analyze ring substituents |
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RuleRings
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RuleRingSubstituents
A rule to analyze ring substituents |
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RuleSubstructures
An abstract class to implement substructure rules |
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RuleVerifyAlertsCounter
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RuleVerifyProperty
Verifies if property is >, < or = to a RuleVerifyProperty.getProperty() value. |
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StructureAlert
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Classes in toxTree.tree.rules used by verhaar.rules.helper | |
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IAlertCounter
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RuleAnySubstructure
Verifies if the molecule has at least one substructure of the list |
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RuleElements
Verifies if the molecule consists of only allowed elements |
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RuleOnlyAllowedSubstructures
Verifies if the structure contains only allowed substructures |
|
RuleSubstructures
An abstract class to implement substructure rules |
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