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Packages that use IDecisionInteractive | |
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com.molecularnetworks.start | |
cramer2 | Class CramerRules is the implementation of Cramer rules [Cramer et al,78]. |
eye | Class SicretRules is the implementation of BfR rules for estimating skin irritation and corrosion potential. |
eye.rules | The package contains implementations of IDecisionRule
rules for SicretRules decision tree. |
mic | |
mic.rules | |
michaelacceptors | |
mutant | |
mutant.rules | |
sicret | Class SicretRules is the implementation of BfR rules for estimating skin irritation and corrosion potential. |
sicret.rules | The package contains implementations of IDecisionRule
rules for SicretRules decision tree. |
toxtree.plugins.dnabinding | |
toxtree.plugins.dnabinding.rules | |
toxtree.plugins.func | |
toxtree.plugins.func.rules | |
toxtree.plugins.kroes | |
toxtree.plugins.kroes.rules | |
toxtree.plugins.lewis | |
toxtree.plugins.moa | |
toxtree.plugins.moa.rules | |
toxtree.plugins.proteinbinding | |
toxtree.plugins.proteinbinding.rules | |
toxtree.plugins.search | |
toxtree.plugins.skinsensitisation | |
toxtree.plugins.skinsensitisation.rules | |
toxtree.plugins.smartcyp | |
toxtree.plugins.verhaar2 | Class toxtree.plugins.verhaar2.VerhaarScheme is the implementation of modified Verhaar structural scheme, according to recommendation from |
toxTree.tree | This packages contains abstract and default classes implementing the interfaces
defined in toxTree.core package. |
toxTree.tree.cramer | Class CramerRules is the implementation of Cramer rules [Cramer et al,78]. |
toxTree.tree.demo | Two simple demo decision trees. |
toxTree.tree.rules | The package contains several generic implementations of IDecisionRule rules |
verhaar | Class VerhaarScheme is the implementation of Verhaar structural scheme for estimating toxicity mode of action. |
verhaar.rules | The package contains implementations of IDecisionRule
rules for VerhaarScheme decision tree. |
Uses of IDecisionInteractive in com.molecularnetworks.start |
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Classes in com.molecularnetworks.start that implement IDecisionInteractive | |
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class |
BiodgeradationRules
Wrapper class that knows the biodegradation rules that are available in the toxBiodegradation plugin. |
Uses of IDecisionInteractive in cramer2 |
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Classes in cramer2 that implement IDecisionInteractive | |
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class |
CramerRulesWithExtensions
TODO update An UserDefinedTree descendant, implementing
the decision tree described in "Cramer G. |
Uses of IDecisionInteractive in eye |
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Classes in eye that implement IDecisionInteractive | |
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class |
EyeIrritationRules
Decision tree for estimating skin irritation and corrosion potential. |
Uses of IDecisionInteractive in eye.rules |
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Classes in eye.rules that implement IDecisionInteractive | |
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class |
Rule1
|
class |
RuleAqueousSolubility_10_2
AqueousSolubility < 0.1 |
class |
RuleAqueousSolubility_10_5
AqueousSolubility < 0.001 |
class |
RuleAqueousSolubility_11_7
|
class |
RuleAqueousSolubility_8_3
|
class |
RuleAqueousSolubility_8_4
|
class |
RuleAqueousSolubility_9_3
AqueousSolubility < 0.0001 |
class |
RuleAqueousSolubility1
|
class |
RuleLipidSolubility_10_4
LipidSolubility < 400.0 |
class |
RuleLipidSolubility_9_1
|
class |
RuleLogP_10_1
LogKow > 3.8 |
class |
RuleLogP_11_4
LogKow < -2 |
class |
RuleLogP_11_5
LogKow > 3.6 |
class |
RuleLogP_11_6
|
class |
RuleLogP_12_4
LogP > 4.5 |
class |
RuleLogP_9_4
LogKow > 5.5 |
class |
RuleLogP1
|
class |
RuleMelting_Point_11_3
MeltingPoint > 200.0 |
class |
RuleMeltingPoint_11_2
MeltingPoint > 200.0 |
class |
RuleMeltingPoint_12_3
MeltingPoint > 65.0 |
class |
RuleMeltingPoint_8_1
|
class |
RuleMolWeight_10_3
Molecular Weight > 370.0 |
class |
RuleMolWeight_11_1
Molecular Weight > 620 |
class |
RuleMolweight_12_1
MoleculWeight > 370 |
class |
RuleMolWeight_12_2
Molecular Weight > 280 |
class |
RuleMolWeight_8_2
|
class |
RuleMolWeight_9_2
MoleculWeight > 290.0 |
Uses of IDecisionInteractive in mic |
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Classes in mic that implement IDecisionInteractive | |
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class |
MICRules
|
Uses of IDecisionInteractive in mic.rules |
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Classes in mic.rules that implement IDecisionInteractive | |
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class |
RuleAlertsForMIC
|
Uses of IDecisionInteractive in michaelacceptors |
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Classes in michaelacceptors that implement IDecisionInteractive | |
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class |
MichaelAcceptorRules
|
Uses of IDecisionInteractive in mutant |
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Classes in mutant that implement IDecisionInteractive | |
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class |
BB_CarcMutRules
|
Uses of IDecisionInteractive in mutant.rules |
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Classes in mutant.rules that implement IDecisionInteractive | |
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class |
QSAR6Applicable
|
class |
RuleAlertsForCarcinogenicity
|
class |
RuleAlertsForGenotoxicCarcinogenicity
|
class |
RuleAlertsNongenotoxicCarcinogenicity
|
class |
UserInputABUnsaturatedAldehyde
|
class |
UserInputAromaticAmine
|
class |
VerifyAlertsGenotoxic
|
class |
VerifyAlertsNongenotoxic
|
Uses of IDecisionInteractive in sicret |
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Classes in sicret that implement IDecisionInteractive | |
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class |
SicretRules
Decision tree for estimating skin irritation and corrosion potential. |
Uses of IDecisionInteractive in sicret.rules |
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Classes in sicret.rules that implement IDecisionInteractive | |
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class |
Rule11
LogKow > 4.5 |
class |
Rule12
VapourPressure < 0.0001 |
class |
Rule13
Molecular Weight > 540.0 |
class |
Rule14
MeltingPoint > 180.0 |
class |
Rule15
AqueousSolubility < 0.0001 |
class |
Rule16
LogKow > 5.5 |
class |
Rule17
LogKow > 3.8 |
class |
Rule18
AqueousSolubility < 0.1 |
class |
Rule19
MoleculWeight > 370.0 |
class |
Rule20
LipidSolubility < 400.0 |
class |
Rule21
MoleculWeight > 380.0 |
class |
Rule22
LipidSolubility < 4.0 |
class |
Rule23
AqueousSolubility < 0.001 |
class |
Rule24
Molecular Weight > 620.0 |
class |
Rule25
MeltingPoint > 50.0 |
class |
Rule26
SurfaceTension > 62.0 |
class |
Rule27
MeltingPoint > 120.0 |
class |
Rule28
LogKow < 0.5 |
class |
Rule29
Molecular Weight > 370.0 |
class |
Rule30
Molecular Weight > 280.0 |
class |
Rule4
MeltingPoint > 55.0 |
class |
Rule8
LipidSolubility < 0.4 |
class |
Rule9
MoleculWeight > 290.0 |
class |
RuleAqueousSolubility
AqueousSolubility < 0.1. |
class |
RuleLipidSolubility
LipidSolubility < 0.01. |
class |
RuleLogP
LogP < 3.1. Expects property to be read from IMolecule.getProperty( RuleLogP.LogKow ). |
class |
RuleMeltingPoint
MeltingPoint < 200. |
class |
RuleMolWeight
Molecular weight > 350. |
class |
RuleSurfaceTension
SurfaceTension > 62.0. |
class |
RuleVapourPressure
VapourPressure < 0.0001. |
Uses of IDecisionInteractive in toxtree.plugins.dnabinding |
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Classes in toxtree.plugins.dnabinding that implement IDecisionInteractive | |
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class |
DNABindingPlugin
Protein binding |
Uses of IDecisionInteractive in toxtree.plugins.dnabinding.rules |
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Classes in toxtree.plugins.dnabinding.rules that implement IDecisionInteractive | |
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class |
RuleDNABindingAlerts
|
class |
VerifyAlertsDNABinding
|
Uses of IDecisionInteractive in toxtree.plugins.func |
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Classes in toxtree.plugins.func that implement IDecisionInteractive | |
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class |
FuncRules
|
Uses of IDecisionInteractive in toxtree.plugins.func.rules |
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Classes in toxtree.plugins.func.rules that implement IDecisionInteractive | |
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class |
RuleAlertsForFunc
|
Uses of IDecisionInteractive in toxtree.plugins.kroes |
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Classes in toxtree.plugins.kroes that implement IDecisionInteractive | |
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class |
Kroes1Tree
|
Uses of IDecisionInteractive in toxtree.plugins.kroes.rules |
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Classes in toxtree.plugins.kroes.rules that implement IDecisionInteractive | |
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class |
KroesRule11
|
class |
KroesRule12
Does estimated intake exceed 1800 µg/day ? |
class |
KroesRule2
Are there structural alerts that raise concern for potential genotoxicity? |
class |
KroesRule4
Does estimated intake exceed TTC of 0.15 µg/day ? |
class |
KroesRule5
Does estimated intake exceed TTC of 1.5 mcg/day ? |
class |
KroesRule7
Does estimated intake exceed TTC of 18µg/day ? |
class |
KroesRule9
|
class |
RuleVerifyIntake
|
Uses of IDecisionInteractive in toxtree.plugins.lewis |
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Classes in toxtree.plugins.lewis that implement IDecisionInteractive | |
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class |
LewisTree
derived by Weka from table2. |
Uses of IDecisionInteractive in toxtree.plugins.moa |
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Classes in toxtree.plugins.moa that implement IDecisionInteractive | |
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class |
MOARules
|
Uses of IDecisionInteractive in toxtree.plugins.moa.rules |
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Classes in toxtree.plugins.moa.rules that implement IDecisionInteractive | |
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class |
RuleAlertsAche
|
class |
RuleAlertsCNS
|
class |
RuleAlertsNarcosis2_2_1
|
class |
RuleAlertsNarcosis3
|
class |
RuleAlertsReactive
|
class |
RuleAlertsUncouplers
|
class |
VerifyAlertsAche
|
class |
VerifyAlertsCNS
|
class |
VerifyAlertsNarcosis1
|
class |
VerifyAlertsNarcosis2
|
class |
VerifyAlertsNarcosis3
|
class |
VerifyAlertsReactive
|
class |
VerifyAlertsUncouplers
|
Uses of IDecisionInteractive in toxtree.plugins.proteinbinding |
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Classes in toxtree.plugins.proteinbinding that implement IDecisionInteractive | |
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class |
ProteinBindingPlugin
Protein binding |
Uses of IDecisionInteractive in toxtree.plugins.proteinbinding.rules |
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Classes in toxtree.plugins.proteinbinding.rules that implement IDecisionInteractive | |
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class |
RuleProteinBindingAlerts
|
class |
VerifyAlertsProteinBinding
|
Uses of IDecisionInteractive in toxtree.plugins.search |
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Classes in toxtree.plugins.search that implement IDecisionInteractive | |
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class |
CompoundLookup
|
Uses of IDecisionInteractive in toxtree.plugins.skinsensitisation |
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Classes in toxtree.plugins.skinsensitisation that implement IDecisionInteractive | |
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class |
SkinSensitisationPlugin
Skin sensitisation |
Uses of IDecisionInteractive in toxtree.plugins.skinsensitisation.rules |
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Classes in toxtree.plugins.skinsensitisation.rules that implement IDecisionInteractive | |
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class |
RuleSkinSensitisationAlerts
|
class |
VerifyAlertsSkinSensitisation
|
Uses of IDecisionInteractive in toxtree.plugins.smartcyp |
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Classes in toxtree.plugins.smartcyp that implement IDecisionInteractive | |
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class |
SMARTCYPPlugin
|
Uses of IDecisionInteractive in toxtree.plugins.verhaar2 |
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Classes in toxtree.plugins.verhaar2 that implement IDecisionInteractive | |
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class |
VerhaarScheme2
An implementaton of Verhaar scheme for predicting toxicity mode of action. |
Uses of IDecisionInteractive in toxTree.tree |
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Classes in toxTree.tree that implement IDecisionInteractive | |
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class |
UserDefinedTree
A default decision tree class, implementing IDecisionMethod interface. |
Uses of IDecisionInteractive in toxTree.tree.cramer |
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Classes in toxTree.tree.cramer that implement IDecisionInteractive | |
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class |
CramerRules
An UserDefinedTree descendant, implementing
the decision tree described in "Cramer G. |
Uses of IDecisionInteractive in toxTree.tree.demo |
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Classes in toxTree.tree.demo that implement IDecisionInteractive | |
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class |
SMARTSTree
|
class |
SubstructureTree
A demo decision tree consisting of a single decision rule , which checks for the presence of benzene ring. |
Uses of IDecisionInteractive in toxTree.tree.rules |
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Classes in toxTree.tree.rules that implement IDecisionInteractive | |
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class |
RuleInitAlertCounter
|
class |
RuleVerifyAlertsCounter
|
class |
RuleVerifyProperty
Verifies if property is >, < or = to a RuleVerifyProperty.getProperty() value. |
class |
UserInputRule
|
Uses of IDecisionInteractive in verhaar |
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Classes in verhaar that implement IDecisionInteractive | |
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class |
VerhaarScheme
An implementaton of Verhaar scheme for predicting toxicity mode of action. |
Uses of IDecisionInteractive in verhaar.rules |
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Classes in verhaar.rules that implement IDecisionInteractive | |
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class |
RuleAlertsClass1
|
class |
RuleAlertsClass2
|
class |
RuleAlertsClass3
|
class |
RuleVerifyClass1Alerts
|
class |
RuleVerifyClass2Alerts
|
class |
RuleVerifyClass3Alerts
|
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