Constant Field Values


Contents
cramer2.rules.*

cramer2.rules.RuleBenzeneAnalogues
public static final java.lang.String smarts "[$([aH1;r6]),$([aX2;r6]),$([a;r6]~A)!$(a~A~*)]1~[$([aH1]),$([aX2]),$(a~A)!$(a~A~*)]~[$([aH1]),$([aX2]),$(a~A)!$(a~A~*)]~[$([aH1]),$([aX2]),$(a~A)!$(a~A~*)]~[$([aH1]),$([aX2]),$(a~A)!$(a~A~*)]~[$([aH1]),$([aX2]),$(a~A)!$(a~A~*)]1"

eye.rules.*

eye.rules.Rule15
public static final transient java.lang.String MSG_15 "Derivatives of 2-halogen benzoic acids and corresponding alkali salts"

eye.rules.Rule16
public static final java.lang.String MSG16 "Halogen benzenes with substituents containing carboxylic acid groups"

eye.rules.Rule17
public static final java.lang.String MSG17 "Aliphatic esters of chloro formic acid"

eye.rules.Rule31
public static final java.lang.String MSG31 "Aliphatic alpha hydroesters"

eye.rules.Rule32
public static final java.lang.String MSG32 "Aliphatic carboxylic acids"

eye.rules.Rule33
public static final java.lang.String MSG33 "Aromatic ammonium salts"

eye.rules.Rule34
public static final java.lang.String MSG34 "Substituted benzoic acid halogenides"

eye.rules.Rule35
public static final java.lang.String MSG35 "Aliphatic iso(thio)cyanates"

eye.rules.Rule36
public static final java.lang.String MSG36 "Chlorosilanes"

eye.rules.Rule37
public static final java.lang.String MSG37 "Mixed oxycarboxysilanes"

eye.rules.Rule38
public static final java.lang.String MSG38 "Aliphatic amines"

eye.rules.Rule39
public static final java.lang.String MSG39 "Alkali salts of aliphatic alcohols"

mic.rules.*

mic.rules.SA34
public static final java.lang.String SA34 "SA34"
public static final java.lang.String SA34_title "H-acceptor-path3-H-acceptor"
public static final java.lang.String smarts "[O,o,OH,N,n,$(P=O),$(C=S),$(S=O),$(C=O)]~[A,a]~[A,a]~[O,o,OH,N,n,$(P=O),$(C=S),$(S=O),$(C=O)]"

sicret.rules.*

sicret.rules.RuleAcidAnhydrides
public static final transient java.lang.String MSG_18H "Acyclic group"

sicret.rules.RuleAcrylicAcids
public static final transient java.lang.String MSG_18H "Acyclic group"

sicret.rules.RuleC10_C20AliphaticAlcohols
public static final transient java.lang.String MSG_18H "Acyclic group"

sicret.rules.RuleCarbamoylHalide
public static final transient java.lang.String MSG_18H "Acyclic group"

sicret.rules.RuleDi_Tri_Nitrobenzenes
public static final transient java.lang.String MSG_18H "Acyclic group"

sicret.rules.RuleHalonitrobenzene
public static final transient java.lang.String MSG_18H "Acyclic group"

sicret.rules.RuleOandPQuinones
public static final transient java.lang.String MSG_18H "Acyclic group"

toxTree.apps.*

toxTree.apps.toxForest.ToxForestActions
public static final java.lang.String _aEditMethod "Edit decision tree"
public static final java.lang.String _aSkipNotImplemented "Skip not implemented ruiles"
public static final java.lang.String _CompoundAction "Chemical Compounds"
public static final java.lang.String _EditAction "Edit"
public static final java.lang.String _FileAction "File"
public static final java.lang.String _HazardAction "Toxic Hazard"

toxTree.core.*

toxTree.core.IMoleculesIterator
public static final java.lang.String MSG_EMPTYFILE "No molecules found! Perhaps the file is empty!"
public static final java.lang.String MSG_ERRORONOPEN "Error when reading file\t"
public static final java.lang.String MSG_ERRORONSAVE "Error when writing file\t"
public static final java.lang.String MSG_OPENSUCCESS "Reading from file successfull\t"
public static final java.lang.String MSG_SAVESUCCESS "Writing to file successfull\t"
public static final java.lang.String MSG_UNSUPPORTEDFORMAT "Error Unsupported format\t"

toxTree.core.Introspection
public static final java.lang.String TOXTREE_HOME "TOXTREE"

toxTree.core.XMLSerializable
public static final java.lang.String xmltag_CATEGORIES "categories"
public static final java.lang.String xmltag_CATEGORY "category"
public static final java.lang.String xmltag_CATEGORYTHRESHOLD "threshold"
public static final java.lang.String xmltag_CLASS "class"
public static final java.lang.String xmltag_EXPLANATION "explanation"
public static final java.lang.String xmltag_ID "id"
public static final java.lang.String xmltag_METHOD "method"
public static final java.lang.String xmltag_METHODPARAMETER "parameter"
public static final java.lang.String xmltag_METHODS "methods"
public static final java.lang.String xmltag_NAME "name"
public static final java.lang.String xmltag_RULE "rule"
public static final java.lang.String xmltag_RULEEXAMPLE "example"
public static final java.lang.String xmltag_RULES "rules"
public static final java.lang.String xmltag_TREEROOT "root"

toxtree.data.*

toxtree.data.ActionList
public static final java.lang.String _CHILDREN "CHILDREN"
public static final java.lang.String _MNEMONICID "MNEMONIC"
public static final java.lang.String _TYPEID "TYPE"

toxtree.data.ToxTreeActions
public static final java.lang.String _aEditMethod "Edit decision tree"
public static final java.lang.String _aSkipNotImplemented "Skip not implemented ruiles"
public static final java.lang.String _CompoundAction "Chemical Compounds"
public static final java.lang.String _EditAction "Edit"
public static final java.lang.String _FileAction "File"
public static final java.lang.String _HazardAction "Toxic Hazard"

toxTree.exceptions.*

toxTree.exceptions.DecisionResultUIDException
public static final java.lang.String _mismatchMessage "Serial Version UID mismatch! "

toxTree.exceptions.DesisionMethodUIDException
public static final java.lang.String _mismatchMessage "Serial Version UID mismatch! "

toxTree.exceptions.DRuleNotImplemented
protected static final java.lang.String _MESSAGE "Rule not implemented!\t"

toxTree.io.*

toxTree.io.batch.BatchProcessing
public static final transient int STATUS_ABORTED 4
public static final transient int STATUS_FINISHED 2
public static final transient int STATUS_NOTINITIALIZED 5
public static final transient int STATUS_NOTSTARTED 0
public static final transient int STATUS_PAUSED 3
public static final transient int STATUS_RUNNING 1

toxTree.logging.*

toxTree.logging.TTLogger
public final int DEFAULT_STACK_LENGTH 5

toxtree.plugins.*

toxtree.plugins.moa.categories.CategoryAcetylcholinesteraseInhibitors
protected static final java.lang.String title "Acetylcholinesterase Inhibitors"

toxtree.plugins.moa.categories.CategoryCentralNervousSystemSeizureAgents
protected static final java.lang.String title "Category Central Nervous System Seizure Agents"

toxtree.plugins.moa.categories.CategoryElectrophileProelectrophileReactivity
protected static final java.lang.String title "Electrophile / Proelectrophile Reactivity"

toxtree.plugins.moa.categories.CategoryOxidativePhosphorylationUncouplers
protected static final java.lang.String title "Oxidative phosphorylation uncoupling"

toxtree.plugins.moa.categories.CategoryUnknown
protected static final java.lang.String title "Unknown"

toxtree.plugins.smartcyp.SMARTCypTreeResult
public static final java.lang.String FORMAT "SMARTCyp.Rank%s%d.%s"

toxTree.query.*

toxTree.query.FunctionalGroups
public static final java.lang.String ACETAL "acetal"
public static final java.lang.String ACETYLENIC "acetylenic"
public static final java.lang.String ALCOHOL "alcohol"
public static final java.lang.String ALDEHYDE "aldehyde"
public static final java.lang.String ALLOCATED "ALLOCATED"
public static final java.lang.String ANHYDRIDE "ANHYDRIDE"
public static final java.lang.String AROMATIC_AMINE "aromatic amine"
public static final java.lang.String AROMATIC_N_OXIDE "Aromatic ring N oxide"
public static final java.lang.String C "C"
public static final java.lang.String CARBONATE "CARBONATE"
public static final java.lang.String CARBONYL "carbonyl"
public static final java.lang.String CARBONYL_ABUNSATURATED "CARBONYL_ABUNSATURATED"
public static final java.lang.String CARBOXYLIC_ACID "carboxylic acid"
public static final java.lang.String CARBOXYLIC_ACID_SALT "carboxylic acid salt"
public static final java.lang.String CH "CH"
public static final java.lang.String CH2 "CH2"
public static final java.lang.String CH3 "CH3"
public static final java.lang.String CYANO "cyano"
public static final java.lang.String CYCLIC_DIESTER "cyclic diester"
public static final java.lang.String DIAZO "diazo"
public static final java.lang.String DONTMARK "DONTMARK"
public static final java.lang.String ESTER "ester"
public static final java.lang.String ETHER "ether"
public static final java.lang.String HYDROCARBON "hydrocarbon"
public static final java.lang.String HYDROCHLORIDE_OF_AMINE "hydrochloride of amine"
public static final java.lang.String HYDROXY "hydroxy"
public static final java.lang.String HYDROXY1 "1\'hydroxy"
public static final java.lang.String HYDROXYESTERSUBSTITED "hydroxy ester substituted"
public static final java.lang.String ISOPRENE "isoprene unit"
public static final java.lang.String KETONE "ketone"
public static final java.lang.String KETONE_SIDECHAIN "ketone_sidechain"
public static final java.lang.String LACTONE "lactone"
public static final java.lang.String MERCAPTAN "mercaptan"
public static final java.lang.String METHOXY "methoxy"
public static final java.lang.String METHYLETHER "methylether"
public static final java.lang.String MSG_HASGROUP "\thas group \t"
public static final java.lang.String MSG_MOLECULEIS "Molecule is\t"
public static final java.lang.String NITRO "nitro"
public static final java.lang.String NNITROSO "N-nitroso"
public static final java.lang.String PHOSPHATE "phosphate"
public static final java.lang.String POLYOXYETHYLENE "polyoxyethylene"
public static final java.lang.String PRIMARY_AMINE "Primary amine"
public static final java.lang.String QUATERNARY_NITROGEN "quaternary nitrogen"
public static final java.lang.String QUATERNARY_NITROGEN_EXCEPTION "quaternary nitrogen exception"
public static final java.lang.String RING_NUMBERING "RingNumbering"
public static final java.lang.String SECONDARY_AMINE "Secondary amine"
public static final java.lang.String SECONDARY_AMINE_ALIPHATIC "Aliphatic Secondary amine"
public static final java.lang.String SULPHAMATE "sulphamate"
public static final java.lang.String SULPHATE "sulphate"
public static final java.lang.String SULPHATE_OF_AMINE "sulphate of amine"
public static final java.lang.String SULPHIDE "sulphide"
public static final java.lang.String SULPHONATE "sulphonate"
public static final java.lang.String TERTIARY_AMINE "tertiary amine"
public static final java.lang.String THIOESTER "thioester"
public static final java.lang.String TRIAZENO "triazeno"

toxTree.query.MolAnalyser
public static final java.lang.String HETEROAROMATIC "Heteroaromatic"
public static final java.lang.String HETEROCYCLIC "Heterocyclic"
public static final java.lang.String HETEROCYCLIC3 "3-membered heterocyclic"

toxTree.query.MolFlags
public static final java.lang.String MOLFLAGS "CRAMERFLAGS"
public static final java.lang.String PARENT "PARENT"

toxTree.tree.*

toxTree.tree.ProgressStatus
public static final transient java.lang.String _eError "ERROR: \t"
public static final transient java.lang.String _eMethodNotAssigned "Decision method not assigned!"
public static final transient java.lang.String _eResultIsEstimating "Decision method is being applied now ...!"
public static final transient java.lang.String _eResultNotEstimated "Decision method has not been applied yet!"
public static final transient java.lang.String _eUnknownState "Unknown state !\t"
public static final transient java.lang.String _pClassID "ClassID"
public static final transient java.lang.String _pDecisionMethod "DecisionMethod"
public static final transient java.lang.String _pRuleResult "RuleResult"

toxTree.tree.RuleResult
public static final java.lang.String prefix "http://localhost"
protected static final java.lang.String wwwAlertFormat "<a href=\'#\' onClick=\"changeImage(\'compound_uri\',\'%s/hilight?parameters=%s\')\">%s.%s</a>"

toxTree.tree.Tree2PrefuseGraph
public static final java.lang.String FIELD_ANSWER "answer"
public static final java.lang.String FIELD_CATEGORY "category"
public static final java.lang.String FIELD_EXPLANATION "explanation"
public static final java.lang.String FIELD_ID "id"
public static final java.lang.String FIELD_NAME "name"
public static final java.lang.String FIELD_NODETYPE "nodetype"
public static final java.lang.String FIELD_RULE "rule"
public static final java.lang.String FIELD_SHORT_NAME "short"

toxTree.tree.cramer.RuleKetoneAlcoholEtc
public static final transient java.lang.String MSG_18H "Acyclic aliphatic ketone,ketal or ketoalcohol with >=4 carbons on either side of the keto group\t"

toxTree.tree.cramer.RuleSomeBenzeneDerivatives
public static final transient java.lang.String MSG_ALKOXYPARACH "Alkoxy group para to hydrocarbon chain susbtituent\t"
public static final transient java.lang.String MSG_BENZENESUBSTITUENT "Benzene substituent found:\t"

toxTree.tree.rules.RuleElements
public static final int modeAllSpecifiedElements 1
public static final int modeAnySpecifiedElements 2
public static final int modeOnlySpecifiedElements 0

toxTree.tree.rules.smarts.Convertor
public static final int COORDINATES_2D 2
public static final int COORDINATES_3D 3

toxtree.ui.*

toxtree.ui.actions.ClearResultAction
public static final java.lang.String _aClearResults "Clear results"

toxtree.ui.actions.EditCompoundAction
public static final java.lang.String _aEditCompound "Edit compound"

toxtree.ui.actions.EstimateAction
public static final java.lang.String _aEstimate "Estimate"

toxtree.ui.actions.EstimateAllAction
public static final java.lang.String _aEstimateAll "Estimate all"

toxtree.ui.actions.ExplainAction
public static final java.lang.String _aExplain "Explain"

toxtree.ui.tree.EditTreeActions
public static final java.lang.String ACTION_EDITCATEGORY "Edit category"
public static final java.lang.String ACTION_EDITRULE "Edit rule"
public static final java.lang.String ACTION_MODIFYEXPLANATION "Modify explanation"
public static final java.lang.String ACTION_MODIFYNOBRANCH "ModifyNoBranch"
public static final java.lang.String ACTION_MODIFYNOCATEGORY "ModifyNoCategory"
public static final java.lang.String ACTION_MODIFYNODE "Edit rule"
public static final java.lang.String ACTION_MODIFYYESBRANCH "ModifyYesBranch"
public static final java.lang.String ACTION_MODIFYYESCATEGORY "ModifyYesCategory"
public static final java.lang.String ACTION_NEWCATEGORY "Select from list"
public static final java.lang.String ACTION_NEWRULE "New rule"
public static final java.lang.String ACTION_VERIFY "Delete rule"
public static final java.lang.String ACTION_VERIFYUNUSED "Remove unused"

toxtree.ui.tree.TreePrefuse
public static final java.lang.String EDGES "graph.edges"
public static final java.lang.String GRAPH "graph"
public static final java.lang.String NODES "graph.nodes"

toxtree.ui.tree.actions.LoadAndEditTreeAction
public static final java.lang.String _aEditMethod "Load from file"

toxtree.ui.tree.actions.NewTreeAction
public static final java.lang.String _aNewMethod "New decision tree"

toxtree.ui.tree.actions.SelectAndEditTreeAction
public static final java.lang.String _aEditMethod "Select from list"

toxtree.ui.tree.actions.SelectTreeAction
public static final java.lang.String _aSelectMethod "Select a decision tree"

toxtree.ui.tree.actions.ViewTreeAction
public static final java.lang.String _aViewMethod "View decision tree"

verhaar.query.*

verhaar.query.FunctionalGroups
public static final java.lang.String ANILINE "ANILINE"
public static final java.lang.String AZARIDINE "AZARIDINE"
public static final java.lang.String BENZYLALCOHOL "BENZYLALCOHOL"
public static final java.lang.String CYCLICESTER "CYCLICESTER"
public static final java.lang.String EPOXIDE "EPOXIDE"
public static final java.lang.String HALOGEN "HALOGEN"
public static final java.lang.String HALOGEN_ALPHA_FROM_UNSATURATION "HALOGEN_ALPHA_FROM_UNSATURATION"
public static final java.lang.String HALOGEN_BETA_FROM_UNSATURATION "HALOGEN_BETA_FROM_UNSATURATION"
public static final java.lang.String IONICGROUP "IONICGROUP"
public static final java.lang.String KETONE_A_B_UNSATURATED "KETONE_A_B_UNSATURATED"
public static final java.lang.String n "n"
public static final java.lang.String PEROXIDE "PEROXIDE"
public static final java.lang.String PHENOL "PHENOL"
public static final java.lang.String PYRIDINE "PYRIDINE"
public static final java.lang.String RINGSUBSTITUTED "RINGSUBSTITUTED"



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