toxTree.query
Class TopologySymbolQueryAtom

java.lang.Object
  extended by org.openscience.cdk.ChemObject
      extended by org.openscience.cdk.Element
          extended by org.openscience.cdk.Isotope
              extended by org.openscience.cdk.AtomType
                  extended by org.openscience.cdk.Atom
                      extended by org.openscience.cdk.isomorphism.matchers.SymbolQueryAtom
                          extended by toxTree.query.TopologySymbolQueryAtom
All Implemented Interfaces:
java.io.Serializable, java.lang.Cloneable, org.openscience.cdk.interfaces.IAtom, org.openscience.cdk.interfaces.IAtomType, org.openscience.cdk.interfaces.ICDKObject, org.openscience.cdk.interfaces.IChemObject, org.openscience.cdk.interfaces.IElement, org.openscience.cdk.interfaces.IIsotope, org.openscience.cdk.isomorphism.matchers.IQueryAtom

public class TopologySymbolQueryAtom
extends org.openscience.cdk.isomorphism.matchers.SymbolQueryAtom

TODO add description

Author:
Vedina Modified 2005-8-19
See Also:
Serialized Form

Nested Class Summary
 
Nested classes/interfaces inherited from interface org.openscience.cdk.interfaces.IAtomType
org.openscience.cdk.interfaces.IAtomType.Hybridization
 
Field Summary
protected  boolean inRing
           
 
Fields inherited from class org.openscience.cdk.Atom
charge, fractionalPoint3d, hydrogenCount, point2d, point3d, stereoParity
 
Fields inherited from class org.openscience.cdk.AtomType
electronValency, formalCharge, formalNeighbourCount, hybridization
 
Fields inherited from class org.openscience.cdk.Isotope
exactMass, naturalAbundance
 
Fields inherited from class org.openscience.cdk.Element
atomicNumber, symbol
 
Constructor Summary
TopologySymbolQueryAtom(boolean inRing)
           
TopologySymbolQueryAtom(org.openscience.cdk.interfaces.IAtom atom)
           
TopologySymbolQueryAtom(org.openscience.cdk.interfaces.IAtom atom, boolean inRing)
           
 
Method Summary
 boolean matches(org.openscience.cdk.interfaces.IAtom atom)
           
 
Methods inherited from class org.openscience.cdk.isomorphism.matchers.SymbolQueryAtom
setHCount, setOperator, toString
 
Methods inherited from class org.openscience.cdk.Atom
clone, compare, getCharge, getFractionalPoint3d, getImplicitHydrogenCount, getPoint2d, getPoint3d, getStereoParity, setCharge, setFractionalPoint3d, setImplicitHydrogenCount, setPoint2d, setPoint3d, setStereoParity
 
Methods inherited from class org.openscience.cdk.AtomType
getAtomTypeName, getBondOrderSum, getCovalentRadius, getFormalCharge, getFormalNeighbourCount, getHybridization, getMaxBondOrder, getValency, setAtomTypeName, setBondOrderSum, setCovalentRadius, setFormalCharge, setFormalNeighbourCount, setHybridization, setMaxBondOrder, setValency
 
Methods inherited from class org.openscience.cdk.Isotope
getExactMass, getMassNumber, getNaturalAbundance, setExactMass, setMassNumber, setNaturalAbundance
 
Methods inherited from class org.openscience.cdk.Element
getAtomicNumber, getSymbol, setAtomicNumber, setSymbol
 
Methods inherited from class org.openscience.cdk.ChemObject
addListener, getBuilder, getFlag, getFlags, getID, getListenerCount, getNotification, getProperties, getProperty, notifyChanged, notifyChanged, removeListener, removeProperty, setFlag, setFlags, setID, setNotification, setProperties, setProperty, shallowCopy
 
Methods inherited from class java.lang.Object
equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 
Methods inherited from interface org.openscience.cdk.interfaces.IAtom
getCharge, getFractionalPoint3d, getImplicitHydrogenCount, getPoint2d, getPoint3d, getStereoParity, setCharge, setFractionalPoint3d, setImplicitHydrogenCount, setPoint2d, setPoint3d, setStereoParity
 
Methods inherited from interface org.openscience.cdk.interfaces.IAtomType
getAtomTypeName, getBondOrderSum, getCovalentRadius, getFormalCharge, getFormalNeighbourCount, getHybridization, getMaxBondOrder, getValency, setAtomTypeName, setBondOrderSum, setCovalentRadius, setFormalCharge, setFormalNeighbourCount, setHybridization, setMaxBondOrder, setValency
 
Methods inherited from interface org.openscience.cdk.interfaces.IIsotope
getExactMass, getMassNumber, getNaturalAbundance, setExactMass, setMassNumber, setNaturalAbundance
 
Methods inherited from interface org.openscience.cdk.interfaces.IElement
getAtomicNumber, getSymbol, setAtomicNumber, setSymbol
 
Methods inherited from interface org.openscience.cdk.interfaces.IChemObject
addListener, clone, getFlag, getFlags, getID, getListenerCount, getNotification, getProperties, getProperty, notifyChanged, notifyChanged, removeListener, removeProperty, setFlag, setFlags, setID, setNotification, setProperties, setProperty
 
Methods inherited from interface org.openscience.cdk.interfaces.ICDKObject
getBuilder
 

Field Detail

inRing

protected boolean inRing
Constructor Detail

TopologySymbolQueryAtom

public TopologySymbolQueryAtom(boolean inRing)

TopologySymbolQueryAtom

public TopologySymbolQueryAtom(org.openscience.cdk.interfaces.IAtom atom)
Parameters:
atom -

TopologySymbolQueryAtom

public TopologySymbolQueryAtom(org.openscience.cdk.interfaces.IAtom atom,
                               boolean inRing)
Method Detail

matches

public boolean matches(org.openscience.cdk.interfaces.IAtom atom)
Specified by:
matches in interface org.openscience.cdk.isomorphism.matchers.IQueryAtom
Overrides:
matches in class org.openscience.cdk.isomorphism.matchers.SymbolQueryAtom


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