toxTree.tree.rules.smarts
Class RuleSMARTSubstructure

java.lang.Object
  extended by java.util.Observable
      extended by toxTree.tree.AbstractRule
          extended by toxTree.tree.rules.smarts.AbstractRuleSmartSubstructure<org.openscience.cdk.interfaces.IAtomContainer>
              extended by toxTree.tree.rules.smarts.RuleSMARTSSubstructureAmbit
                  extended by toxTree.tree.rules.smarts.RuleSMARTSubstructure
All Implemented Interfaces:
ambit2.smarts.query.ISmartsPatternFactory, java.io.Serializable, java.lang.Cloneable, IDecisionRule, IImplementationDetails, XMLSerializable, IRuleSMARTSubstructures
Direct Known Subclasses:
Rule22, RuleA_Lactams, RuleAcidImides, RuleAcrylicAndMethacrylicEsters, RuleAlcohols, RuleAldehyde, RuleAldehydes, RuleAliphaticCyclicNoBranches, RuleAliphaticEther, RuleAliphaticFusedRingsNonBranched, RuleAliphaticSaturatedAcidsAndHalogenatedAcids, RuleAlkylAlkanolAmines, RuleAlphaAlkynes, RuleAlphaHalogenatedAmidesAndThioamides, RuleAlyphaticSulphonicAcids, RuleAminoAcids, RuleAromaticHalogen, RuleAromaticNGroups, RuleAromaticSulphonicAcid, RuleAzoGroup, RuleBenzeneAnalogues, RuleBenzylHalides, RuleBetaLactones, RuleCyanoGroupOnMoreThanEightAtomsChain, RuleDivalentSulphur, RuleEpoxide, RuleEpoxides, RuleEsters, RuleEthyleneGlycolEthers, RuleFormaldehyde, RuleHalogenatedAlkanesAndAlkenes, RuleHalogenSubstitutedBranched, RuleHydroPeroxides, RuleKetenes, RuleKetone, RuleKetones, RuleMoreThanTwoHydroxyOnAromaticRing, RuleNitrile, RuleNNitroso, RuleOneHalogenOnUnbranched, RulePhosphateEsters, RulePyridineRing, RuleTerminalIsopropylNonCyclic, RuleTerminalTertButyl, RuleTertiaryAmine, RuleTriazineRing, RuleTrifluoromethyl, RuleTwoHalogensOnUnbranchedNonCyclic, RuleTwoTerminalDiaminoGroupsOnNonCyclic, RuleTwoTerminalDoubleBondsOnUnbranched

public class RuleSMARTSubstructure
extends RuleSMARTSSubstructureAmbit

For backward compatibility

Author:
nina
See Also:
Serialized Form

Field Summary
 
Fields inherited from class toxTree.tree.rules.smarts.AbstractRuleSmartSubstructure
containsAllSubstructures, final_and_patch, smartsPatterns
 
Fields inherited from class toxTree.tree.AbstractRule
changes, editable, ERR_STRUCTURENOTPREPROCESSED, examples, explanation, id, logger, MSG_NO, MSG_YES, no, residueIDHidden, title
 
Fields inherited from interface toxTree.core.XMLSerializable
xmltag_CATEGORIES, xmltag_CATEGORY, xmltag_CATEGORYTHRESHOLD, xmltag_CLASS, xmltag_EXPLANATION, xmltag_ID, xmltag_METHOD, xmltag_METHODPARAMETER, xmltag_METHODS, xmltag_NAME, xmltag_RULE, xmltag_RULEEXAMPLE, xmltag_RULES, xmltag_TREEROOT
 
Constructor Summary
RuleSMARTSubstructure()
           
 
Method Summary
 
Methods inherited from class toxTree.tree.rules.smarts.RuleSMARTSSubstructureAmbit
createSmartsPattern, getObjectToVerify
 
Methods inherited from class toxTree.tree.rules.smarts.AbstractRuleSmartSubstructure
addSubstructure, addSubstructure, addSubstructure, clearSubstructures, containsAllSubstructures, deleteSubstructure, equals, getImplementationDetails, getSelector, getSmartsPatterns, getSubstructure, initSingleSMARTS, isAPossibleHit, isImplemented, removeSingleSMARTS, setContainsAllSubstructures, setSmartsPatterns, setSubstructure, setSubstructure, verifyRule, verifyRule
 
Methods inherited from class toxTree.tree.AbstractRule
addPropertyChangeListener, clearFlags, clone, createRule, fromXML, getEditor, getExampleMolecule, getExamples, getExplanation, getID, getNum, getTitle, hideResiduesID, isEditable, isResidueIDHidden, log, log, log, makeMolecule, removePropertyChangeListener, setEditable, setExampleMolecule, setExamples, setExplanation, setID, setNum, setTitle, toShallowXML, toString, toXML
 
Methods inherited from class java.util.Observable
addObserver, clearChanged, countObservers, deleteObserver, deleteObservers, hasChanged, notifyObservers, notifyObservers, setChanged
 
Methods inherited from class java.lang.Object
finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Constructor Detail

RuleSMARTSubstructure

public RuleSMARTSubstructure()


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