toxTree.core
Interface XMLSerializable

All Known Implementing Classes:
AbstractRule, AbstractRuleHilightHits, AbstractRuleSmartSubstructure, AbstractTree, AcylTransferAlerts, AcylTransferAlerts, AcylTransferAlerts, AcylTransferRule, AcylTransferRule, AcylTransferRule, BatchDecisionResultsList, BB_CarcMutRules, BiodgeradationRules, CategoriesList, CategoryAcetylcholinesteraseInhibitors, CategoryBiodegradable, CategoryCarcinogen, CategoryCentralNervousSystemSeizureAgents, CategoryCorrosive, CategoryCorrosiveEye, CategoryCorrosiveSkin, CategoryElectrophileProelectrophileReactivity, CategoryError, CategoryIrritating, CategoryIrritatingOrCorrosive, CategoryMichaelAcceptor, CategoryModerateIrritation2Eye, CategoryMutagenTA100, CategoryNarcosis1, CategoryNarcosis2, CategoryNarcosis3, CategoryNoGenotoxicAlert, CategoryNonMutagen, CategoryNoNongenotoxicAlert, CategoryNotCarcinogen, CategoryNotCorrosive, CategoryNotCorrosive2Eye, CategoryNotCorrosive2Skin, CategoryNotCorrosive2SkinAndIrritating2Eye, CategoryNotCorrosive2SkinEye, CategoryNotCorrosive2SkinOrIrritating2Eye, CategoryNotIrritating, CategoryNotIrritating2Eye, CategoryNotIrritatingOrCorrosive, CategoryNotIrritatingOrCorrosive2Eye, CategoryOxidativePhosphorylationUncouplers, CategoryPersistent, CategoryPositiveAlertGenotoxic, CategoryPositiveAlertNongenotoxic, CategoryUnknown, CategoryUnknown, CategoryUnknown, CategoryUnknown, CategoryUnknown, Class1BaselineToxicity, Class2LessInertCompounds, Class3UnspecificReactivity, Class4SpecificMechanism, Class5Unknown, CompoundLookup, CramerClass1, CramerClass1, CramerClass2, CramerClass2, CramerClass3, CramerClass3, CramerRules, CramerRulesWithExtensions, CYP1A2, CYP2A, CYP2B, CYP2C, CYP2D, CYP2E, CYP3A4, DecisionMethodsList, DecisionNodesList, DecisionResultsList, DefaultCategory, DefaultClass1, DefaultClass2, DNABindingCategory, DNABindingPlugin, DNABindingRule, EyeIrritationRules, FG, FG1, FG10, FG11, FG12, FG13, FG14, FG15, FG16, FG17, FG18, FG19, FG2, FG20, FG21, FG22, FG23_1, FG23_2, FG23_3, FG23_4, FG23_5, FG23_6, FG23_7, FG23_8, FG23_LS, FG24_1, FG24_2, FG24_3, FG24_LS, FG25, FG26, FG27, FG28, FG29, FG3_1, FG3_2, FG3_LS, FG30, FG31_1, FG31_2, FG31_3, FG31_4, FG31_5, FG31_6, FG31_7, FG31_8, FG31_9, FG31_LS, FG32, FG33_1, FG33_2, FG33_3, FG33_4, FG33_5, FG33_6, FG33_7, FG33_8, FG33_LS, FG34_1, FG34_2, FG34_LS, FG35_1, FG35_10, FG35_11, FG35_12, FG35_13, FG35_2, FG35_3, FG35_4, FG35_5, FG35_6, FG35_7, FG35_8, FG35_9, FG35_LS, FG36, FG37_1, FG37_2, FG37_3, FG37_4, FG37_LS, FG38, FG39, FG4, FG4_1, FG4_2, FG4_LS, FG40, FG41_1, FG41_2, FG41_3, FG41_4, FG41_5, FG41_LS, FG42, FG43, FG44, FG45, FG46_1, FG46_2, FG46_LS, FG47, FG48_1, FG48_2, FG48_LS, FG49, FG5, FG50_1, FG50_2, FG50_3, FG50_LS, FG51_1, FG51_2, FG51_3, FG51_LS, FG52_1, FG52_2, FG52_3, FG52_LS, FG53_1, FG53_2, FG53_3, FG53_LS, FG54, FG55, FG56, FG57, FG58, FG59, FG6, FG60, FG61, FG62, FG63, FG64, FG65, FG66, FG67, FG68, FG69, FG7, FG70, FG71, FG72, FG73, FG74_1, FG74_2, FG74_3, FG74_4, FG74_5, FG74_6, FG74_7, FG74_LS, FG75_1, FG75_2, FG75_3, FG75_4, FG75_LS, FG76, FG77, FG78_1, FG78_2, FG78_3, FG78_4, FG78_LS, FG79_1, FG79_2, FG79_3, FG79_4, FG79_LS, FG8, FG80_1, FG80_2, FG80_LS, FG81_1, FG81_2, FG81_3, FG81_4, FG81_LS, FG82_1, FG82_2, FG82_3, FG82_4, FG82_LS, FG83_1, FG83_2, FG83_3, FG83_4, FG83_LS, FG84_1, FG84_2, FG84_LS, FG85, FG86, FG87, FG88, FG89, FG9, FG90, Find, Found, FuncCat1, FuncCat2, FuncRules, Kroes1Tree, KroesRule10, KroesRule11, KroesRule12, KroesRule2, KroesRule3, KroesRule4, KroesRule5, KroesRule6, KroesRule7, KroesRule8, KroesRule9, LewisTree, LinearDiscriminantRule, MetaboliteGenerator, MichaelAcceptorRule, MichaelAcceptorRule, MichaelAcceptorRule, MichaelAcceptorRules, MichaelAcceptors, MichaelAcceptors, MichaelAcceptors, micronucleusClass1, micronucleusClass2, MICRules, MOARules, MultiLabelDecisionNodesList, MutantCategory, NegligibleRisk, NoAlerts, NoAlerts, NoAlerts, NoSites, NotASafetyConcern, NotFound, PB29, PB30, ProteinBindingCategory, ProteinBindingPlugin, ProteinBindingRule, QSAR6Applicable, QSARApplicable, RequireCompoundSpecificToxicityData, Rule_areadepthratio, Rule_high_AreaDepthRatio, Rule_high_pKa, Rule_highLogP, Rule_highVolume, Rule_lowVolume, Rule_volume, Rule01, Rule03, Rule1, Rule1, Rule10A, Rule10B, Rule11, Rule11, Rule11, Rule12, Rule12A, Rule12B, Rule13, Rule13, Rule13_AliphaticMonoalcohols, Rule13A, Rule13B, Rule14, Rule14, Rule14, Rule141, Rule142, Rule143, Rule144, Rule14Aliphatic_glycerol_monoethers, Rule15, Rule15, Rule15, Rule151, Rule152, Rule153, Rule154, Rule16, Rule16, Rule16, Rule161, Rule17, Rule17, Rule17, Rule171, Rule18, Rule18, Rule19, Rule19, Rule2, Rule20, Rule20, Rule21, Rule21, Rule21, Rule22, Rule22, Rule22, Rule23, Rule23, Rule23, Rule24, Rule24, Rule24, Rule25, Rule25, Rule25, Rule26, Rule26, Rule27, Rule27, Rule28, Rule28, Rule29, Rule29, Rule3, Rule30, Rule30, Rule31, Rule31, Rule32, Rule32, Rule32, Rule33, Rule33, Rule34, Rule34, Rule35, Rule35, Rule36, Rule36, Rule37, Rule37, Rule38, Rule38, Rule39, Rule3FuncGroups, Rule3MemberedHeterocycle, Rule4, Rule4, Rule4A, Rule4B, Rule5, Rule6, Rule7, Rule8, Rule8, Rule9, Rule9A, Rule9B, RuleA_Lactams, RuleABUnsaturatedAldehyde, RuleAcidAnhydrides, RuleAcidImides, RuleAcrylicAcids, RuleAcrylicAndMethacrylicEsters, RuleAcyclicAcetalEsterOfQ30, RuleAlcohol, RuleAlcohols, RuleAldehyde, RuleAldehyde, RuleAldehydes, RuleAlertsAche, RuleAlertsClass1, RuleAlertsClass2, RuleAlertsClass3, RuleAlertsCNS, RuleAlertsForCarcinogenicity, RuleAlertsForFunc, RuleAlertsForGenotoxicCarcinogenicity, RuleAlertsForMIC, RuleAlertsNarcosis1_1_1, RuleAlertsNarcosis1_1_1_1, RuleAlertsNarcosis1_1_2, RuleAlertsNarcosis1_1_2_1, RuleAlertsNarcosis1_1_2_3, RuleAlertsNarcosis2_2_1, RuleAlertsNarcosis3, RuleAlertsNongenotoxicCarcinogenicity, RuleAlertsReactive, RuleAlertsUncouplers, RuleAliphaticCyclicNoBranches, RuleAliphaticEther, RuleAliphaticFusedRingsNonBranched, RuleAliphaticSaturatedAcidsAndHalogenatedAcids, RuleAliphaticWithSomeFuncGroups, RuleAlkylAldehyde, RuleAlkylAlkanolAmines, RuleAlkylHydrazine, RuleAlkylPhosphonate, RuleAllAllowedElements, RuleAllSubstructures, RuleAlphaAlkynes, RuleAlphaHalogenatedAmidesAndThioamides, RuleAlyphaticSulphonicAcids, RuleAmine, RuleAminoAcids, RuleAnySubstituents, RuleAnySubstructure, RuleAnySubstructureCounter, RuleAqueousSolubility, RuleAqueousSolubility, RuleAqueousSolubility_10_2, RuleAqueousSolubility_10_5, RuleAqueousSolubility_11_7, RuleAqueousSolubility_8_3, RuleAqueousSolubility_8_4, RuleAqueousSolubility_9_3, RuleAqueousSolubility1, RuleAromatic, RuleAromaticAldehyde, RuleAromaticAmineNoSulfonicGroup, RuleAromaticAmines, RuleAromaticAzo, RuleAromaticDiazo, RuleAromaticHalogen, RuleAromaticNGroups, RuleAromaticNitro, RuleAromaticSulphonicAcid, RuleArylMethylHalide, RuleAziridine, RuleAzo, RuleAzoGroup, RuleBenzene, RuleBenzeneAnalogues, RuleBenzylHalides, RuleBetaLactones, RuleC10_C20AliphaticAlcohols, RuleCarbamoylHalide, RuleCarbohydrate, RuleCatecholsResorcinolsHydroquinones, RuleCommonComponentOfFood, RuleCommonTerpene, RuleCyanoGroupOnMoreThanEightAtomsChain, RuleCyclopropaneEtc, RuleDACancerogenicityAromaticAmines, RuleDAMutagenicityABUnsaturatedAldehydes, RuleDAMutagenicityAromaticAmines, RuleDerivedAromaticAmines, RuleDescriptor, RuleDescriptorRange, RuleDi_Tri_Nitrobenzenes, RuleDivalentSulphur, RuleDNABindingAlerts, RuleElements, RuleElementsCounter, RuleEpoxide, RuleEpoxide, RuleEpoxides, RuleEsters, RuleEther, RuleEthyleneGlycolEthers, RuleFormaldehyde, RuleFreeABUnsaturatedHetero, RuleFuran, RuleHalide, RuleHalogenatedAlkanesAndAlkenes, RuleHalogenSubstitutedBranched, RuleHalonitrobenzene, RuleHasOnlyC_H_O, RuleHasOnlyC_H_O, RuleHasOnlyC_H_O_Halogen, RuleHasOnlyC_H_O_Halogen, RuleHasOnlyC_H_O_N, RuleHasOnlyC_H_O_N, RuleHasOnlyC_H_O_N_Halogen, RuleHasOnlyC_H_O_N_Halogen, RuleHasOnlyC_H_O_N_S, RuleHasOnlyC_H_O_N_S, RuleHasOnlySaltSulphonateSulphate, RuleHasOnlySaltSulphonateSulphate, RuleHasOtherThanC_H_O_N_S2, RuleHeteroaromatic, RuleHeterocycle, RuleHeterocyclic, RuleHeterocyclicComplexSubstituents, RuleHydrazine, RuleHydroPeroxides, RuleIminomethyl, RuleInitAlertCounter, RuleIonicGroups, RuleIsAromatic, RuleIsCommonTerpene, RuleIsHeterocyclic, RuleIsOpenChain, RuleKetenes, RuleKetone, RuleKetone, RuleKetoneAlcoholEtc, RuleKetones, RuleKroesFig1Q1, RuleLactoneOrCyclicDiester, RuleLactonesFusedOrUnsaturated, RuleLactonesFusedOrUnsaturated, RuleLipidSolubility, RuleLipidSolubility, RuleLipidSolubility_10_4, RuleLipidSolubility_9_1, RuleLipinski5, RuleLogP, RuleLogP, RuleLogP_10_1, RuleLogP_11_4, RuleLogP_11_5, RuleLogP_11_6, RuleLogP_12_4, RuleLogP_9_4, RuleLogP1, RuleLogPRange, RuleManyAromaticRings, RuleManyAromaticRings14, RuleManyAromaticRings28, RuleMelting_Point_11_3, RuleMeltingPoint, RuleMeltingPoint_11_2, RuleMeltingPoint_12_3, RuleMeltingPoint_8_1, RuleMolecularMassRange, RuleMolWeight, RuleMolWeight, RuleMolWeight_10_3, RuleMolWeight_11_1, RuleMolweight_12_1, RuleMolWeight_12_2, RuleMolWeight_8_2, RuleMolWeight_9_2, RuleMonocarbocyclic, RuleMonocycloalkanoneEtc, RuleMoreThanTwoHydroxyOnAromaticRing, RuleNChloramine, RuleNHydroxy, RuleNitrile, RuleNitro, RuleNitrogenMustard, RuleNitrosamine, RuleNitroso, RuleNMethylol, RuleNNitroso, RuleNormalBodyConstituent, RuleNormalBodyConstituent, RuleNOxide, RuleNucleosides, RuleOandPQuinones, RuleOneHalogenOnUnbranched, RuleOnlyAllowedSubstructures, RuleOnlyAllowedSubstructuresCounter, RuleOnlyFuncGroupsQ30, RuleOpenChain, RulePhenols, RulePhosphateEsters, RulePhosphoricGroups, RuleprimaryAlkylHalide, RulePropiolactone, RuleProteinBindingAlerts, RulePyridineRing, RuleQuaternaryOrganicAmmoniumAndPhosphoniumSalts, RuleReadilyHydrolised, RuleReadilyHydrolysed29, RuleReadilyHydrolysedMononuclear, RuleReadilyHydrolysedPO4, RuleReadilyHydrolysedToCommonterpene, RuleRingAllowedSubstituents, RuleRingComplexSubstituents30, RuleRingMainStrucSubstituents, RuleRingOtherThanAllowedSubstituents, RuleRings, RuleRingSubstituents, RuleRingsWithSubstituents, RuleRingWithSubstituents, RuleSimplyBranchedAliphaticHydrocarbon, RuleSkinSensitisationAlerts, RulesList, RuleSMARTSSubstructureAmbit, RuleSMARTSubstructure, RuleSMARTSubstructureCDK, RuleSomeBenzeneDerivatives, RuleStructuresList, RuleSubstructures, RuleSufficientSulphonateGroups, RuleSurfaceTension, RuleTerminalIsopropylNonCyclic, RuleTerminalTertButyl, RuleTertiaryAmine, RuleToxicFunctionalGroups, RuleTriAndTetraHalogenatedBenzenes, RuleTriazineRing, RuleTrifluoromethyl, RuleTwoHalogensOnUnbranchedNonCyclic, RuleTwoOrMoreRings, RuleTwoTerminalDiaminoGroupsOnNonCyclic, RuleTwoTerminalDoubleBondsOnUnbranched, RuleUnchargedOrganophosphates, RuleUrethaneDerivatives, RuleVapourPressure, RuleVerifyAlertsCounter, RuleVerifyClass1Alerts, RuleVerifyClass2Alerts, RuleVerifyClass3Alerts, RuleVerifyIntake, RuleVerifyProperty, SA1, SA1_gen, SA10, SA10_gen, SA11, SA11_gen, SA12, SA12_gen, SA13, SA13_gen, SA14, SA14_gen, SA15, SA15_gen, SA16, SA16_gen, SA17_nogen, SA18, SA18_gen, SA19, SA19_gen, SA2, SA2_gen, SA20_nogen, SA21, SA21_gen, SA22, SA22_gen, SA23, SA23_gen, SA24, SA24_gen, SA25, SA25_gen, SA26, SA26_gen, SA27, SA27_gen, SA28, SA28_gen, SA28bis, SA28bis_gen, SA28ter, SA28ter_gen, SA29, SA29_gen, SA3, SA3_gen, SA30, SA30_gen, SA31a_nogen, SA31b_nogen, SA31c_nogen, SA32, SA33, SA34, SA35, SA36, SA37_gen, SA38_gen, SA39_gen_and_nogen, SA4, SA4_gen, SA40_nogen, SA41_nogen, SA42_nogen, SA43_nogen, SA44_nogen, SA45_nogen, SA46_nogen, SA47_nogen, SA48_nogen, SA49_nogen, SA5, SA5_gen, SA50_nogen, SA51_nogen, SA52_nogen, SA53_nogen, SA54_nogen, SA55_nogen, SA56_nogen, SA6, SA6_gen, SA7, SA7_gen, SA8, SA8_gen, SA9, SA9_gen, ShiffBaseAlerts, ShiffBaseAlerts, ShiffBaseAlerts, ShiffBaseRule, ShiffBaseRule, ShiffBaseRule, SicretRules, SitesHigherRank, SitesRank1, SitesRank2, SitesRank3, SkinSensitisationCategory, SkinSensitisationPlugin, SkinSensitisationRule, SMARTCYPPlugin, SMARTCYPRuleHigherRank, SMARTCYPRuleRank1, SMARTCYPRuleRank2, SMARTCYPRuleRank3, SMARTSTree, SN1Alerts, SN1Rule, SN2Alerts, SN2Alerts, SN2Alerts, SN2Rule, SN2Rule, SN2Rule, SNArAlerts, SNArAlerts, SNARRule, SNARRule, StructureAlert, StructureAlertAmbit, StructureAlertCDK, SubstructureTree, UserDefinedTree, UserInputABUnsaturatedAldehyde, UserInputAromaticAmine, UserInputRule, VerhaarScheme, VerhaarScheme2, VerifyAlertsAche, VerifyAlertsCNS, VerifyAlertsDNABinding, VerifyAlertsGenotoxic, VerifyAlertsNarcosis1, VerifyAlertsNarcosis2, VerifyAlertsNarcosis3, VerifyAlertsNongenotoxic, VerifyAlertsProteinBinding, VerifyAlertsReactive, VerifyAlertsSkinSensitisation, VerifyAlertsUncouplers

public interface XMLSerializable


Field Summary
static java.lang.String xmltag_CATEGORIES
           
static java.lang.String xmltag_CATEGORY
           
static java.lang.String xmltag_CATEGORYTHRESHOLD
           
static java.lang.String xmltag_CLASS
           
static java.lang.String xmltag_EXPLANATION
           
static java.lang.String xmltag_ID
           
static java.lang.String xmltag_METHOD
           
static java.lang.String xmltag_METHODPARAMETER
           
static java.lang.String xmltag_METHODS
           
static java.lang.String xmltag_NAME
           
static java.lang.String xmltag_RULE
           
static java.lang.String xmltag_RULEEXAMPLE
           
static java.lang.String xmltag_RULES
           
static java.lang.String xmltag_TREEROOT
           
 
Method Summary
 void fromXML(org.w3c.dom.Element xml)
           
 org.w3c.dom.Element toShallowXML(org.w3c.dom.Document document)
           
 org.w3c.dom.Element toXML(org.w3c.dom.Document document)
           
 

Field Detail

xmltag_NAME

static final java.lang.String xmltag_NAME
See Also:
Constant Field Values

xmltag_ID

static final java.lang.String xmltag_ID
See Also:
Constant Field Values

xmltag_EXPLANATION

static final java.lang.String xmltag_EXPLANATION
See Also:
Constant Field Values

xmltag_METHODS

static final java.lang.String xmltag_METHODS
See Also:
Constant Field Values

xmltag_METHOD

static final java.lang.String xmltag_METHOD
See Also:
Constant Field Values

xmltag_CLASS

static final java.lang.String xmltag_CLASS
See Also:
Constant Field Values

xmltag_METHODPARAMETER

static final java.lang.String xmltag_METHODPARAMETER
See Also:
Constant Field Values

xmltag_TREEROOT

static final java.lang.String xmltag_TREEROOT
See Also:
Constant Field Values

xmltag_RULES

static final java.lang.String xmltag_RULES
See Also:
Constant Field Values

xmltag_RULE

static final java.lang.String xmltag_RULE
See Also:
Constant Field Values

xmltag_RULEEXAMPLE

static final java.lang.String xmltag_RULEEXAMPLE
See Also:
Constant Field Values

xmltag_CATEGORIES

static final java.lang.String xmltag_CATEGORIES
See Also:
Constant Field Values

xmltag_CATEGORY

static final java.lang.String xmltag_CATEGORY
See Also:
Constant Field Values

xmltag_CATEGORYTHRESHOLD

static final java.lang.String xmltag_CATEGORYTHRESHOLD
See Also:
Constant Field Values
Method Detail

toXML

org.w3c.dom.Element toXML(org.w3c.dom.Document document)
                          throws XMLDecisionMethodException
Throws:
XMLDecisionMethodException

fromXML

void fromXML(org.w3c.dom.Element xml)
             throws XMLDecisionMethodException
Throws:
XMLDecisionMethodException

toShallowXML

org.w3c.dom.Element toShallowXML(org.w3c.dom.Document document)
                                 throws XMLDecisionMethodException
Throws:
XMLDecisionMethodException


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