toxTree.tree.cramer
Class RuleHasOtherThanC_H_O_N_S2

java.lang.Object
  extended by java.util.Observable
      extended by toxTree.tree.AbstractRule
          extended by toxTree.tree.rules.RuleElements
              extended by toxTree.tree.cramer.RuleHasOtherThanC_H_O_N_S2
All Implemented Interfaces:
java.io.Serializable, java.lang.Cloneable, IDecisionRule, XMLSerializable

public class RuleHasOtherThanC_H_O_N_S2
extends RuleElements

Rule 3 of the Cramer scheme (see CramerRules)

Version:
0.1, 2005-5-2
Author:
Nina Jeliazkova
See Also:
Serialized Form

Field Summary
 
Fields inherited from class toxTree.tree.rules.RuleElements
comparison, elements, mode, modeAllSpecifiedElements, modeAnySpecifiedElements, modeOnlySpecifiedElements
 
Fields inherited from class toxTree.tree.AbstractRule
changes, editable, ERR_STRUCTURENOTPREPROCESSED, examples, explanation, id, logger, MSG_NO, MSG_YES, no, residueIDHidden, title
 
Fields inherited from interface toxTree.core.XMLSerializable
xmltag_CATEGORIES, xmltag_CATEGORY, xmltag_CATEGORYTHRESHOLD, xmltag_CLASS, xmltag_EXPLANATION, xmltag_ID, xmltag_METHOD, xmltag_METHODPARAMETER, xmltag_METHODS, xmltag_NAME, xmltag_RULE, xmltag_RULEEXAMPLE, xmltag_RULES, xmltag_TREEROOT
 
Constructor Summary
RuleHasOtherThanC_H_O_N_S2()
          Constructor
 
Method Summary
 java.lang.String getTitle()
          Rule name is an arbitrary string, preferably one line, reflecting the essence of the rule
(e.g.
 boolean isImplemented()
           
 boolean oldVerifyRule(org.openscience.cdk.interfaces.IAtomContainer mol, org.openscience.cdk.interfaces.IAtomContainer selected)
           
 void setTitle(java.lang.String name)
          Sets rule name
 boolean verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol)
          Verifies the rule.
 boolean verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol, org.openscience.cdk.interfaces.IAtomContainer selected)
           
 
Methods inherited from class toxTree.tree.rules.RuleElements
addElement, contains, equals, getElements, gethalogens, getMode, getSelector, hasOnlySpecifiedElements, removeElement, select, setComparisonMode, setElements, setHalogens, setHalogens, setMode
 
Methods inherited from class toxTree.tree.AbstractRule
addPropertyChangeListener, clearFlags, clone, createRule, fromXML, getEditor, getExampleMolecule, getExamples, getExplanation, getID, getNum, hideResiduesID, isEditable, isResidueIDHidden, log, log, log, makeMolecule, removePropertyChangeListener, setEditable, setExampleMolecule, setExamples, setExplanation, setID, setNum, toShallowXML, toString, toXML
 
Methods inherited from class java.util.Observable
addObserver, clearChanged, countObservers, deleteObserver, deleteObservers, hasChanged, notifyObservers, notifyObservers, setChanged
 
Methods inherited from class java.lang.Object
finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Constructor Detail

RuleHasOtherThanC_H_O_N_S2

public RuleHasOtherThanC_H_O_N_S2()
Constructor

Method Detail

verifyRule

public boolean verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol)
                   throws DecisionMethodException
Verifies the rule.

Specified by:
verifyRule in interface IDecisionRule
Overrides:
verifyRule in class RuleElements
Parameters:
mol - org.openscience.cdk.interfaces.AtomContainer
Returns:
rule result, boolean
Throws:
DecisionMethodException
See Also:
IDecisionRule.verifyRule(IAtomContainer)

verifyRule

public boolean verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol,
                          org.openscience.cdk.interfaces.IAtomContainer selected)
                   throws DecisionMethodException
Overrides:
verifyRule in class RuleElements
Throws:
DecisionMethodException

oldVerifyRule

public boolean oldVerifyRule(org.openscience.cdk.interfaces.IAtomContainer mol,
                             org.openscience.cdk.interfaces.IAtomContainer selected)
                      throws DecisionMethodException
Throws:
DecisionMethodException

isImplemented

public boolean isImplemented()
Specified by:
isImplemented in interface IDecisionRule
Overrides:
isImplemented in class RuleElements
Returns:
false if the rule is not implemented and true if it is

getTitle

public java.lang.String getTitle()
Description copied from interface: IDecisionRule
Rule name is an arbitrary string, preferably one line, reflecting the essence of the rule
(e.g. "Is aromatic")

Specified by:
getTitle in interface IDecisionRule
Overrides:
getTitle in class RuleElements
Returns:
rule name
See Also:
IDecisionRule.getTitle()

setTitle

public void setTitle(java.lang.String name)
Description copied from interface: IDecisionRule
Sets rule name

Specified by:
setTitle in interface IDecisionRule
Overrides:
setTitle in class AbstractRule
See Also:
IDecisionRule.setTitle(java.lang.String)


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