toxTree.tree.rules
Class UserInputRule

java.lang.Object
  extended by java.util.Observable
      extended by toxTree.tree.AbstractRule
          extended by toxTree.tree.rules.UserInputRule
All Implemented Interfaces:
java.io.Serializable, java.lang.Cloneable, IDecisionInteractive, IDecisionRule, XMLSerializable
Direct Known Subclasses:
UserInputABUnsaturatedAldehyde, UserInputAromaticAmine

public abstract class UserInputRule
extends AbstractRule
implements IDecisionInteractive

See Also:
Serialized Form

Nested Class Summary
 
Nested classes/interfaces inherited from interface toxTree.core.IDecisionInteractive
IDecisionInteractive.UserOptions
 
Field Summary
protected  java.beans.PropertyChangeListener listener
           
protected  java.lang.String message
           
protected  IDecisionInteractive.UserOptions options
           
 
Fields inherited from class toxTree.tree.AbstractRule
changes, editable, ERR_STRUCTURENOTPREPROCESSED, examples, explanation, id, logger, MSG_NO, MSG_YES, no, residueIDHidden, title
 
Fields inherited from interface toxTree.core.XMLSerializable
xmltag_CATEGORIES, xmltag_CATEGORY, xmltag_CATEGORYTHRESHOLD, xmltag_CLASS, xmltag_EXPLANATION, xmltag_ID, xmltag_METHOD, xmltag_METHODPARAMETER, xmltag_METHODS, xmltag_NAME, xmltag_RULE, xmltag_RULEEXAMPLE, xmltag_RULES, xmltag_TREEROOT
 
Constructor Summary
UserInputRule()
           
UserInputRule(java.lang.String message)
           
 
Method Summary
 boolean getInteractive()
           
 java.beans.PropertyChangeListener getListener()
           
 java.lang.String getMessage()
           
 IDecisionInteractive.UserOptions getOptions()
           
 boolean isImplemented()
           
 boolean isSilentvalue()
           
 void setInteractive(boolean interactive)
           
 void setListener(java.beans.PropertyChangeListener listener)
           
 void setMessage(java.lang.String message)
           
 void setOptions(IDecisionInteractive.UserOptions options)
           
 void setSilentvalue(boolean silentvalue)
           
 boolean verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol)
          This is the core of a IDecisionRule behaviour.
 
Methods inherited from class toxTree.tree.AbstractRule
addPropertyChangeListener, clearFlags, clone, createRule, equals, fromXML, getEditor, getExampleMolecule, getExamples, getExplanation, getID, getNum, getSelector, getTitle, hideResiduesID, isEditable, isResidueIDHidden, log, log, log, makeMolecule, removePropertyChangeListener, setEditable, setExampleMolecule, setExamples, setExplanation, setID, setNum, setTitle, toShallowXML, toString, toXML
 
Methods inherited from class java.util.Observable
addObserver, clearChanged, countObservers, deleteObserver, deleteObservers, hasChanged, notifyObservers, notifyObservers, setChanged
 
Methods inherited from class java.lang.Object
finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 
Methods inherited from interface toxTree.core.IDecisionInteractive
removeListener
 

Field Detail

message

protected java.lang.String message

options

protected IDecisionInteractive.UserOptions options

listener

protected java.beans.PropertyChangeListener listener
Constructor Detail

UserInputRule

public UserInputRule()

UserInputRule

public UserInputRule(java.lang.String message)
Method Detail

getOptions

public IDecisionInteractive.UserOptions getOptions()
Specified by:
getOptions in interface IDecisionInteractive

setOptions

public void setOptions(IDecisionInteractive.UserOptions options)
Specified by:
setOptions in interface IDecisionInteractive

getListener

public java.beans.PropertyChangeListener getListener()
Specified by:
getListener in interface IDecisionInteractive

setListener

public void setListener(java.beans.PropertyChangeListener listener)
Specified by:
setListener in interface IDecisionInteractive

verifyRule

public boolean verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol)
                   throws DecisionMethodException
Description copied from interface: IDecisionRule
This is the core of a IDecisionRule behaviour. The method returns true if the answer of the rule is YES for the analyzed molecule org.openscience.cdk.interfaces.AtomContainer and FALSE if the answer of the rule is NO for the analyzed molecule org.openscience.cdk.interfaces.AtomContainer??

Specified by:
verifyRule in interface IDecisionRule
Parameters:
mol - org.openscience.cdk.interfaces.AtomContainer
Returns:
rule result, boolean
Throws:
DecisionMethodException

isImplemented

public boolean isImplemented()
Specified by:
isImplemented in interface IDecisionRule
Overrides:
isImplemented in class AbstractRule
Returns:
false if the rule is not implemented and true if it is

getMessage

public java.lang.String getMessage()

setMessage

public void setMessage(java.lang.String message)

isSilentvalue

public boolean isSilentvalue()

setSilentvalue

public void setSilentvalue(boolean silentvalue)

getInteractive

public boolean getInteractive()
Specified by:
getInteractive in interface IDecisionInteractive

setInteractive

public void setInteractive(boolean interactive)
Specified by:
setInteractive in interface IDecisionInteractive


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