|
||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |
java.lang.Objectorg.openscience.cdk.ChemObject
org.openscience.cdk.Element
org.openscience.cdk.Isotope
org.openscience.cdk.AtomType
org.openscience.cdk.Atom
org.openscience.cdk.isomorphism.matchers.SymbolQueryAtom
toxTree.query.TopologySymbolQueryAtom
public class TopologySymbolQueryAtom
TODO add description
Nested Class Summary |
---|
Nested classes/interfaces inherited from interface org.openscience.cdk.interfaces.IAtomType |
---|
org.openscience.cdk.interfaces.IAtomType.Hybridization |
Field Summary | |
---|---|
protected boolean |
inRing
|
Fields inherited from class org.openscience.cdk.Atom |
---|
charge, fractionalPoint3d, hydrogenCount, point2d, point3d, stereoParity |
Fields inherited from class org.openscience.cdk.AtomType |
---|
electronValency, formalCharge, formalNeighbourCount, hybridization |
Fields inherited from class org.openscience.cdk.Isotope |
---|
exactMass, naturalAbundance |
Fields inherited from class org.openscience.cdk.Element |
---|
atomicNumber, symbol |
Constructor Summary | |
---|---|
TopologySymbolQueryAtom(boolean inRing)
|
|
TopologySymbolQueryAtom(org.openscience.cdk.interfaces.IAtom atom)
|
|
TopologySymbolQueryAtom(org.openscience.cdk.interfaces.IAtom atom,
boolean inRing)
|
Method Summary | |
---|---|
boolean |
matches(org.openscience.cdk.interfaces.IAtom atom)
|
Methods inherited from class org.openscience.cdk.isomorphism.matchers.SymbolQueryAtom |
---|
setHCount, setOperator, toString |
Methods inherited from class org.openscience.cdk.Atom |
---|
clone, compare, getCharge, getFractionalPoint3d, getImplicitHydrogenCount, getPoint2d, getPoint3d, getStereoParity, setCharge, setFractionalPoint3d, setImplicitHydrogenCount, setPoint2d, setPoint3d, setStereoParity |
Methods inherited from class org.openscience.cdk.AtomType |
---|
getAtomTypeName, getBondOrderSum, getCovalentRadius, getFormalCharge, getFormalNeighbourCount, getHybridization, getMaxBondOrder, getValency, setAtomTypeName, setBondOrderSum, setCovalentRadius, setFormalCharge, setFormalNeighbourCount, setHybridization, setMaxBondOrder, setValency |
Methods inherited from class org.openscience.cdk.Isotope |
---|
getExactMass, getMassNumber, getNaturalAbundance, setExactMass, setMassNumber, setNaturalAbundance |
Methods inherited from class org.openscience.cdk.Element |
---|
getAtomicNumber, getSymbol, setAtomicNumber, setSymbol |
Methods inherited from class org.openscience.cdk.ChemObject |
---|
addListener, getBuilder, getFlag, getFlags, getID, getListenerCount, getNotification, getProperties, getProperty, notifyChanged, notifyChanged, removeListener, removeProperty, setFlag, setFlags, setID, setNotification, setProperties, setProperty, shallowCopy |
Methods inherited from class java.lang.Object |
---|
equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Methods inherited from interface org.openscience.cdk.interfaces.IAtom |
---|
getCharge, getFractionalPoint3d, getImplicitHydrogenCount, getPoint2d, getPoint3d, getStereoParity, setCharge, setFractionalPoint3d, setImplicitHydrogenCount, setPoint2d, setPoint3d, setStereoParity |
Methods inherited from interface org.openscience.cdk.interfaces.IAtomType |
---|
getAtomTypeName, getBondOrderSum, getCovalentRadius, getFormalCharge, getFormalNeighbourCount, getHybridization, getMaxBondOrder, getValency, setAtomTypeName, setBondOrderSum, setCovalentRadius, setFormalCharge, setFormalNeighbourCount, setHybridization, setMaxBondOrder, setValency |
Methods inherited from interface org.openscience.cdk.interfaces.IIsotope |
---|
getExactMass, getMassNumber, getNaturalAbundance, setExactMass, setMassNumber, setNaturalAbundance |
Methods inherited from interface org.openscience.cdk.interfaces.IElement |
---|
getAtomicNumber, getSymbol, setAtomicNumber, setSymbol |
Methods inherited from interface org.openscience.cdk.interfaces.IChemObject |
---|
addListener, clone, getFlag, getFlags, getID, getListenerCount, getNotification, getProperties, getProperty, notifyChanged, notifyChanged, removeListener, removeProperty, setFlag, setFlags, setID, setNotification, setProperties, setProperty |
Methods inherited from interface org.openscience.cdk.interfaces.ICDKObject |
---|
getBuilder |
Field Detail |
---|
protected boolean inRing
Constructor Detail |
---|
public TopologySymbolQueryAtom(boolean inRing)
public TopologySymbolQueryAtom(org.openscience.cdk.interfaces.IAtom atom)
atom
- public TopologySymbolQueryAtom(org.openscience.cdk.interfaces.IAtom atom, boolean inRing)
Method Detail |
---|
public boolean matches(org.openscience.cdk.interfaces.IAtom atom)
matches
in interface org.openscience.cdk.isomorphism.matchers.IQueryAtom
matches
in class org.openscience.cdk.isomorphism.matchers.SymbolQueryAtom
|
||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |