cramer2.rules
Class RuleReadilyHydrolysedPO4

java.lang.Object
  extended by java.util.Observable
      extended by toxTree.tree.AbstractRule
          extended by toxTree.tree.AbstractRuleHilightHits
              extended by toxTree.tree.rules.RuleReadilyHydrolised
                  extended by cramer2.rules.RuleReadilyHydrolysedPO4
All Implemented Interfaces:
java.io.Serializable, java.lang.Cloneable, IDecisionRule, XMLSerializable

public class RuleReadilyHydrolysedPO4
extends RuleReadilyHydrolised

cleaves PO4's from compounds, and analyses the remaining fragments Modified Dec, 2008

See Also:
Serialized Form

Field Summary
 
Fields inherited from class toxTree.tree.AbstractRule
changes, editable, ERR_STRUCTURENOTPREPROCESSED, examples, explanation, id, logger, MSG_NO, MSG_YES, no, residueIDHidden, title
 
Fields inherited from interface toxTree.core.XMLSerializable
xmltag_CATEGORIES, xmltag_CATEGORY, xmltag_CATEGORYTHRESHOLD, xmltag_CLASS, xmltag_EXPLANATION, xmltag_ID, xmltag_METHOD, xmltag_METHODPARAMETER, xmltag_METHODS, xmltag_NAME, xmltag_RULE, xmltag_RULEEXAMPLE, xmltag_RULES, xmltag_TREEROOT
 
Constructor Summary
RuleReadilyHydrolysedPO4()
          Constructor
 
Method Summary
 boolean verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol)
          Returns true if the compound is readily hydrolised Sets MolFlags hydrolysis products (to be used further )
 
Methods inherited from class toxTree.tree.rules.RuleReadilyHydrolised
isImplemented, verifyRule
 
Methods inherited from class toxTree.tree.AbstractRuleHilightHits
getSelector
 
Methods inherited from class toxTree.tree.AbstractRule
addPropertyChangeListener, clearFlags, clone, createRule, equals, fromXML, getEditor, getExampleMolecule, getExamples, getExplanation, getID, getNum, getTitle, hideResiduesID, isEditable, isResidueIDHidden, log, log, log, makeMolecule, removePropertyChangeListener, setEditable, setExampleMolecule, setExamples, setExplanation, setID, setNum, setTitle, toShallowXML, toString, toXML
 
Methods inherited from class java.util.Observable
addObserver, clearChanged, countObservers, deleteObserver, deleteObservers, hasChanged, notifyObservers, notifyObservers, setChanged
 
Methods inherited from class java.lang.Object
finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Constructor Detail

RuleReadilyHydrolysedPO4

public RuleReadilyHydrolysedPO4()
Constructor

Method Detail

verifyRule

public boolean verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol)
                   throws DecisionMethodException
Description copied from class: RuleReadilyHydrolised
Returns true if the compound is readily hydrolised Sets MolFlags hydrolysis products (to be used further )

Specified by:
verifyRule in interface IDecisionRule
Overrides:
verifyRule in class RuleReadilyHydrolised
Parameters:
mol - org.openscience.cdk.interfaces.AtomContainer
Returns:
rule result, boolean
Throws:
DecisionMethodException


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