toxTree.tree.cramer
Class RuleHasOtherThanC_H_O_N_S2
java.lang.Object
java.util.Observable
toxTree.tree.AbstractRule
toxTree.tree.rules.RuleElements
toxTree.tree.cramer.RuleHasOtherThanC_H_O_N_S2
- All Implemented Interfaces:
- java.io.Serializable, java.lang.Cloneable, IDecisionRule, XMLSerializable
public class RuleHasOtherThanC_H_O_N_S2
- extends RuleElements
Rule 3 of the Cramer scheme (see CramerRules
)
- Version:
- 0.1, 2005-5-2
- Author:
- Nina Jeliazkova
- See Also:
- Serialized Form
Fields inherited from class toxTree.tree.AbstractRule |
changes, editable, ERR_STRUCTURENOTPREPROCESSED, examples, explanation, id, logger, MSG_NO, MSG_YES, no, residueIDHidden, title |
Fields inherited from interface toxTree.core.XMLSerializable |
xmltag_CATEGORIES, xmltag_CATEGORY, xmltag_CATEGORYTHRESHOLD, xmltag_CLASS, xmltag_EXPLANATION, xmltag_ID, xmltag_METHOD, xmltag_METHODPARAMETER, xmltag_METHODS, xmltag_NAME, xmltag_RULE, xmltag_RULEEXAMPLE, xmltag_RULES, xmltag_TREEROOT |
Method Summary |
java.lang.String |
getTitle()
Rule name is an arbitrary string, preferably one line, reflecting the essence of the rule
(e.g. |
boolean |
isImplemented()
|
boolean |
oldVerifyRule(org.openscience.cdk.interfaces.IAtomContainer mol,
org.openscience.cdk.interfaces.IAtomContainer selected)
|
void |
setTitle(java.lang.String name)
Sets rule name |
boolean |
verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol)
Verifies the rule. |
boolean |
verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol,
org.openscience.cdk.interfaces.IAtomContainer selected)
|
Methods inherited from class toxTree.tree.rules.RuleElements |
addElement, contains, equals, getElements, gethalogens, getMode, getSelector, hasOnlySpecifiedElements, removeElement, select, setComparisonMode, setElements, setHalogens, setHalogens, setMode |
Methods inherited from class toxTree.tree.AbstractRule |
addPropertyChangeListener, clearFlags, clone, createRule, fromXML, getEditor, getExampleMolecule, getExamples, getExplanation, getID, getNum, hideResiduesID, isEditable, isResidueIDHidden, log, log, log, makeMolecule, removePropertyChangeListener, setEditable, setExampleMolecule, setExamples, setExplanation, setID, setNum, toShallowXML, toString, toXML |
Methods inherited from class java.util.Observable |
addObserver, clearChanged, countObservers, deleteObserver, deleteObservers, hasChanged, notifyObservers, notifyObservers, setChanged |
Methods inherited from class java.lang.Object |
finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
RuleHasOtherThanC_H_O_N_S2
public RuleHasOtherThanC_H_O_N_S2()
- Constructor
verifyRule
public boolean verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol)
throws DecisionMethodException
- Verifies the rule.
- Specified by:
verifyRule
in interface IDecisionRule
- Overrides:
verifyRule
in class RuleElements
- Parameters:
mol
- org.openscience.cdk.interfaces.AtomContainer
- Returns:
- rule result, boolean
- Throws:
DecisionMethodException
- See Also:
IDecisionRule.verifyRule(IAtomContainer)
verifyRule
public boolean verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol,
org.openscience.cdk.interfaces.IAtomContainer selected)
throws DecisionMethodException
- Overrides:
verifyRule
in class RuleElements
- Throws:
DecisionMethodException
oldVerifyRule
public boolean oldVerifyRule(org.openscience.cdk.interfaces.IAtomContainer mol,
org.openscience.cdk.interfaces.IAtomContainer selected)
throws DecisionMethodException
- Throws:
DecisionMethodException
isImplemented
public boolean isImplemented()
- Specified by:
isImplemented
in interface IDecisionRule
- Overrides:
isImplemented
in class RuleElements
- Returns:
- false if the rule is not implemented and true if it is
getTitle
public java.lang.String getTitle()
- Description copied from interface:
IDecisionRule
- Rule name is an arbitrary string, preferably one line, reflecting the essence of the rule
(e.g. "Is aromatic")
- Specified by:
getTitle
in interface IDecisionRule
- Overrides:
getTitle
in class RuleElements
- Returns:
- rule name
- See Also:
IDecisionRule.getTitle()
setTitle
public void setTitle(java.lang.String name)
- Description copied from interface:
IDecisionRule
- Sets rule name
- Specified by:
setTitle
in interface IDecisionRule
- Overrides:
setTitle
in class AbstractRule
- See Also:
IDecisionRule.setTitle(java.lang.String)
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