Uses of Class
toxTree.exceptions.DecisionResultException

Packages that use DecisionResultException
cramer2.categories   
mic.rules   
michaelacceptors   
mutant.rules   
toxTree.apps.toxForest   
toxTree.core This packages contains only interface definitions, defining essential classes in toxTree application. 
toxtree.data   
toxTree.exceptions Exceptions defined for toxTree classes 
toxtree.plugins.dnabinding.rules   
toxtree.plugins.func.rules   
toxtree.plugins.proteinbinding.rules   
toxtree.plugins.skinsensitisation.rules   
toxtree.plugins.smartcyp   
toxtree.plugins.verhaar2.rules The package contains implementations of IDecisionRule rules for VerhaarScheme decision tree. 
toxTree.tree This packages contains abstract and default classes implementing the interfaces defined in toxTree.core package. 
toxTree.tree.cramer Class CramerRules is the implementation of Cramer rules [Cramer et al,78]. 
verhaar.rules The package contains implementations of IDecisionRule rules for VerhaarScheme decision tree. 
 

Uses of DecisionResultException in cramer2.categories
 

Methods in cramer2.categories that throw DecisionResultException
 void CramerTreeResult.addRuleResult(IDecisionRule rule, boolean value, org.openscience.cdk.interfaces.IAtomContainer molecule)
           
 void CramerTreeResult.assignResult(org.openscience.cdk.interfaces.IAtomContainer mol)
           
 

Uses of DecisionResultException in mic.rules
 

Methods in mic.rules that throw DecisionResultException
 void MICTreeResult.addRuleResult(IDecisionRule rule, boolean value, org.openscience.cdk.interfaces.IAtomContainer molecule)
           
 void MICTreeResult.assignResult(org.openscience.cdk.interfaces.IAtomContainer mol)
           
 java.util.Hashtable<java.lang.String,java.lang.String> MICTreeResult.getExplanation(org.openscience.cdk.interfaces.IAtomContainer mol)
           
 

Uses of DecisionResultException in michaelacceptors
 

Methods in michaelacceptors that throw DecisionResultException
 void MATreeResult.addRuleResult(IDecisionRule rule, boolean value, org.openscience.cdk.interfaces.IAtomContainer molecule)
           
 

Uses of DecisionResultException in mutant.rules
 

Methods in mutant.rules that throw DecisionResultException
 void MutantTreeResult.addRuleResult(IDecisionRule rule, boolean value, org.openscience.cdk.interfaces.IAtomContainer molecule)
           
 void MutantTreeResult.assignResult(org.openscience.cdk.interfaces.IAtomContainer mol)
           
 java.util.Hashtable<java.lang.String,java.lang.String> MutantTreeResult.getExplanation(org.openscience.cdk.interfaces.IAtomContainer mol)
           
 

Uses of DecisionResultException in toxTree.apps.toxForest
 

Methods in toxTree.apps.toxForest that throw DecisionResultException
 void ToxForestData.classify(IDecisionResult treeResult)
           
 ConfusionMatrix ToxForestData.classifyAll(IDecisionMethodsList methods)
           
 

Uses of DecisionResultException in toxTree.core
 

Methods in toxTree.core that throw DecisionResultException
 void IDecisionResult.addRuleResult(IDecisionRule rule, boolean value, org.openscience.cdk.interfaces.IAtomContainer molecule)
           
 void IDecisionResult.assignResult(org.openscience.cdk.interfaces.IAtomContainer mol)
           
 boolean IDecisionResult.classify(org.openscience.cdk.interfaces.IAtomContainer mol)
           
 java.lang.StringBuffer IDecisionResult.explain(boolean verbose)
           
 IDecisionCategory IDecisionResult.getCategory(int index)
           
 org.openscience.cdk.interfaces.IAtomContainer IDecisionResult.getMolecule(int index)
           
 IDecisionRule IDecisionResult.getRule(int index)
           
 RuleResult IDecisionResult.getRuleResult(int index)
           
 void IDecisionResult.hilightAlert(IDecisionRule rule)
           
 void IDecisionResult.hilightAlert(RuleResult ruleresult)
           
 void IDecisionResult.setMolecule(org.openscience.cdk.interfaces.IAtomContainer molecule)
           
 void IDecisionResult.setSilent(boolean silent)
           
 

Uses of DecisionResultException in toxtree.data
 

Methods in toxtree.data that throw DecisionResultException
 void DecisionMethodData.classify(IDecisionResult treeResult)
           
 ConfusionMatrix DecisionMethodData.classifyAll(IDecisionMethodsList methods)
           
 ConfusionMatrix DecisionMethodData.classifyAll(IDecisionResult treeResult)
           
 void DecisionMethodData.filterAll(IDecisionResult treeResult)
           
 

Uses of DecisionResultException in toxTree.exceptions
 

Subclasses of DecisionResultException in toxTree.exceptions
 class DCategoryUnknown
          TODO Add DCategoryUnassigned description
 class DecisionResultIOException
           
 class DecisionResultUIDException
           
 class DMethodNotAssigned
          TODO Add MethodNotAssigned description
 

Uses of DecisionResultException in toxtree.plugins.dnabinding.rules
 

Methods in toxtree.plugins.dnabinding.rules that throw DecisionResultException
 void DNABindingTreeResult.addRuleResult(IDecisionRule rule, boolean value, org.openscience.cdk.interfaces.IAtomContainer molecule)
           
 void DNABindingTreeResult.assignResult(org.openscience.cdk.interfaces.IAtomContainer mol)
           
 java.util.Hashtable<java.lang.String,java.lang.String> DNABindingTreeResult.getExplanation(org.openscience.cdk.interfaces.IAtomContainer mol)
           
 

Uses of DecisionResultException in toxtree.plugins.func.rules
 

Methods in toxtree.plugins.func.rules that throw DecisionResultException
 void FuncTreeResult.addRuleResult(IDecisionRule rule, boolean value, org.openscience.cdk.interfaces.IAtomContainer molecule)
           
 void FuncTreeResult.assignResult(org.openscience.cdk.interfaces.IAtomContainer mol)
           
 java.util.Hashtable<java.lang.String,java.lang.String> FuncTreeResult.getExplanation(org.openscience.cdk.interfaces.IAtomContainer mol)
           
 

Uses of DecisionResultException in toxtree.plugins.proteinbinding.rules
 

Methods in toxtree.plugins.proteinbinding.rules that throw DecisionResultException
 void ProteinBindingTreeResult.addRuleResult(IDecisionRule rule, boolean value, org.openscience.cdk.interfaces.IAtomContainer molecule)
           
 void ProteinBindingTreeResult.assignResult(org.openscience.cdk.interfaces.IAtomContainer mol)
           
 java.util.Hashtable<java.lang.String,java.lang.String> ProteinBindingTreeResult.getExplanation(org.openscience.cdk.interfaces.IAtomContainer mol)
           
 

Uses of DecisionResultException in toxtree.plugins.skinsensitisation.rules
 

Methods in toxtree.plugins.skinsensitisation.rules that throw DecisionResultException
 void SkinSensitisationTreeResult.addRuleResult(IDecisionRule rule, boolean value, org.openscience.cdk.interfaces.IAtomContainer molecule)
           
 void SkinSensitisationTreeResult.assignResult(org.openscience.cdk.interfaces.IAtomContainer mol)
           
 java.util.Hashtable<java.lang.String,java.lang.String> SkinSensitisationTreeResult.getExplanation(org.openscience.cdk.interfaces.IAtomContainer mol)
           
 

Uses of DecisionResultException in toxtree.plugins.smartcyp
 

Methods in toxtree.plugins.smartcyp that throw DecisionResultException
 void SMARTCypTreeResult.assignResult(org.openscience.cdk.interfaces.IAtomContainer mol)
           
 java.util.Hashtable<java.lang.String,java.lang.String> SMARTCypTreeResult.getExplanation(org.openscience.cdk.interfaces.IAtomContainer mol)
           
 

Uses of DecisionResultException in toxtree.plugins.verhaar2.rules
 

Methods in toxtree.plugins.verhaar2.rules that throw DecisionResultException
 void Verhaar2TreeResult.assignResult(org.openscience.cdk.interfaces.IAtomContainer mol)
           
 

Uses of DecisionResultException in toxTree.tree
 

Methods in toxTree.tree that throw DecisionResultException
 void TreeResult.addRuleResult(IDecisionRule rule, boolean value, org.openscience.cdk.interfaces.IAtomContainer molecule)
           
 void BatchDecisionResultsList.addRuleResult(IDecisionRule rule, boolean value, org.openscience.cdk.interfaces.IAtomContainer molecule)
           
 void TreeResult.assignResult(org.openscience.cdk.interfaces.IAtomContainer mol)
           
 void BatchDecisionResultsList.assignResult(org.openscience.cdk.interfaces.IAtomContainer mol)
           
 boolean TreeResult.classify(org.openscience.cdk.interfaces.IAtomContainer mol)
           
 boolean BatchDecisionResultsList.classify(org.openscience.cdk.interfaces.IAtomContainer mol)
           
 java.lang.StringBuffer TreeResult.explain(boolean verbose)
          return StringBuffer with textual explanation of the rules executed
 java.lang.StringBuffer BatchDecisionResultsList.explain(boolean verbose)
           
 IDecisionCategory TreeResult.getCategory(int index)
           
 IDecisionCategory BatchDecisionResultsList.getCategory(int index)
           
 org.openscience.cdk.interfaces.IAtomContainer TreeResult.getMolecule(int index)
           
 org.openscience.cdk.interfaces.IAtomContainer BatchDecisionResultsList.getMolecule(int index)
           
 IDecisionRule TreeResult.getRule(int index)
           
 RuleResult TreeResult.getRuleResult(int index)
           
 RuleResult BatchDecisionResultsList.getRuleResult(int index)
           
 void TreeResult.hilightAlert(IDecisionRule rule)
           
 void BatchDecisionResultsList.hilightAlert(IDecisionRule rule)
           
 void TreeResult.hilightAlert(RuleResult ruleResult)
           
 void BatchDecisionResultsList.hilightAlert(RuleResult ruleresult)
           
 void BatchDecisionResultsList.setMolecule(org.openscience.cdk.interfaces.IAtomContainer molecule)
           
 void TreeResult.setSilent(boolean silent)
           
 void BatchDecisionResultsList.setSilent(boolean silent)
           
 

Uses of DecisionResultException in toxTree.tree.cramer
 

Methods in toxTree.tree.cramer that throw DecisionResultException
 void CramerTreeResult.addRuleResult(IDecisionRule rule, boolean value, org.openscience.cdk.interfaces.IAtomContainer molecule)
           
 void CramerTreeResult.assignResult(org.openscience.cdk.interfaces.IAtomContainer mol)
           
 

Uses of DecisionResultException in verhaar.rules
 

Methods in verhaar.rules that throw DecisionResultException
 void VerhaarTreeResult.assignResult(org.openscience.cdk.interfaces.IAtomContainer mol)
           
 



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