mutant.rules
Class RuleDACancerogenicityAromaticAmines

java.lang.Object
  extended by java.util.Observable
      extended by toxTree.tree.AbstractRule
          extended by toxTree.qsar.LinearDiscriminantRule
              extended by mutant.rules.RuleDACancerogenicityAromaticAmines
All Implemented Interfaces:
java.io.Serializable, java.lang.Cloneable, IDecisionRule, IDescriptorBased, IImplementationDetails, XMLSerializable

public class RuleDACancerogenicityAromaticAmines
extends LinearDiscriminantRule

See Also:
Serialized Form

Field Summary
 
Fields inherited from class toxTree.qsar.LinearDiscriminantRule
dictionary, model, threshold
 
Fields inherited from class toxTree.tree.AbstractRule
changes, editable, ERR_STRUCTURENOTPREPROCESSED, examples, explanation, id, logger, MSG_NO, MSG_YES, no, residueIDHidden, title
 
Fields inherited from interface toxTree.core.XMLSerializable
xmltag_CATEGORIES, xmltag_CATEGORY, xmltag_CATEGORYTHRESHOLD, xmltag_CLASS, xmltag_EXPLANATION, xmltag_ID, xmltag_METHOD, xmltag_METHODPARAMETER, xmltag_METHODS, xmltag_NAME, xmltag_RULE, xmltag_RULEEXAMPLE, xmltag_RULES, xmltag_TREEROOT
 
Constructor Summary
RuleDACancerogenicityAromaticAmines()
           
 
Method Summary
protected  boolean compare(double value, double threshold)
           
static LinearQSARModel createCancerogenicityAromaticAminesModel()
           
protected  DRuleException createException(ambit2.base.exceptions.QSARModelException x)
           
 java.lang.String getImplementationDetails()
          Thus, if calculated w >29.08, then the substance should be carcinogen if calculated w< 29.08, then the substance should be noncarcinogen
 
Methods inherited from class toxTree.qsar.LinearDiscriminantRule
getModel, getSelector, getThreshold, hint, isCalculated, isImplemented, setCalculated, setModel, setThreshold, verifyRule
 
Methods inherited from class toxTree.tree.AbstractRule
addPropertyChangeListener, clearFlags, clone, createRule, equals, fromXML, getEditor, getExampleMolecule, getExamples, getExplanation, getID, getNum, getTitle, hideResiduesID, isEditable, isResidueIDHidden, log, log, log, makeMolecule, removePropertyChangeListener, setEditable, setExampleMolecule, setExamples, setExplanation, setID, setNum, setTitle, toShallowXML, toString, toXML
 
Methods inherited from class java.util.Observable
addObserver, clearChanged, countObservers, deleteObserver, deleteObservers, hasChanged, notifyObservers, notifyObservers, setChanged
 
Methods inherited from class java.lang.Object
finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Constructor Detail

RuleDACancerogenicityAromaticAmines

public RuleDACancerogenicityAromaticAmines()
Method Detail

createCancerogenicityAromaticAminesModel

public static LinearQSARModel createCancerogenicityAromaticAminesModel()

compare

protected boolean compare(double value,
                          double threshold)
Overrides:
compare in class LinearDiscriminantRule

getImplementationDetails

public java.lang.String getImplementationDetails()
Thus, if calculated w >29.08, then the substance should be carcinogen if calculated w< 29.08, then the substance should be noncarcinogen

Specified by:
getImplementationDetails in interface IImplementationDetails
Overrides:
getImplementationDetails in class LinearDiscriminantRule

createException

protected DRuleException createException(ambit2.base.exceptions.QSARModelException x)
Specified by:
createException in class LinearDiscriminantRule


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