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java.lang.Objectjava.util.Observable
toxTree.tree.AbstractRule
toxTree.tree.rules.smarts.AbstractRuleSmartSubstructure<org.openscience.cdk.interfaces.IAtomContainer>
toxTree.tree.rules.smarts.RuleSMARTSubstructureCDK
mutant.rules.RuleAromaticDiazo
public class RuleAromaticDiazo
Field Summary | |
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protected static java.lang.String |
aromatic_diazo
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protected SimpleReactions |
sr
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Fields inherited from class toxTree.tree.rules.smarts.AbstractRuleSmartSubstructure |
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containsAllSubstructures, final_and_patch, smartsPatterns |
Fields inherited from class toxTree.tree.AbstractRule |
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changes, editable, ERR_STRUCTURENOTPREPROCESSED, examples, explanation, id, logger, MSG_NO, MSG_YES, no, residueIDHidden, title |
Fields inherited from interface toxTree.core.XMLSerializable |
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xmltag_CATEGORIES, xmltag_CATEGORY, xmltag_CATEGORYTHRESHOLD, xmltag_CLASS, xmltag_EXPLANATION, xmltag_ID, xmltag_METHOD, xmltag_METHODPARAMETER, xmltag_METHODS, xmltag_NAME, xmltag_RULE, xmltag_RULEEXAMPLE, xmltag_RULES, xmltag_TREEROOT |
Constructor Summary | |
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RuleAromaticDiazo()
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Method Summary | |
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boolean |
verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol)
This is the core of a IDecisionRule behaviour. |
Methods inherited from class toxTree.tree.rules.smarts.RuleSMARTSubstructureCDK |
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createSmartsPattern, getObjectToVerify |
Methods inherited from class toxTree.tree.rules.smarts.AbstractRuleSmartSubstructure |
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addSubstructure, addSubstructure, addSubstructure, clearSubstructures, containsAllSubstructures, deleteSubstructure, equals, getImplementationDetails, getSelector, getSmartsPatterns, getSubstructure, initSingleSMARTS, isAPossibleHit, isImplemented, removeSingleSMARTS, setContainsAllSubstructures, setSmartsPatterns, setSubstructure, setSubstructure, verifyRule |
Methods inherited from class toxTree.tree.AbstractRule |
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addPropertyChangeListener, clearFlags, clone, createRule, fromXML, getEditor, getExampleMolecule, getExamples, getExplanation, getID, getNum, getTitle, hideResiduesID, isEditable, isResidueIDHidden, log, log, log, makeMolecule, removePropertyChangeListener, setEditable, setExampleMolecule, setExamples, setExplanation, setID, setNum, setTitle, toShallowXML, toString, toXML |
Methods inherited from class java.util.Observable |
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addObserver, clearChanged, countObservers, deleteObserver, deleteObservers, hasChanged, notifyObservers, notifyObservers, setChanged |
Methods inherited from class java.lang.Object |
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finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Field Detail |
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protected static java.lang.String aromatic_diazo
protected transient SimpleReactions sr
Constructor Detail |
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public RuleAromaticDiazo()
Method Detail |
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public boolean verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol) throws DecisionMethodException
IDecisionRule
IDecisionRule
behaviour. The method returns true
if the answer of the rule is YES for the analyzed molecule org.openscience.cdk.interfaces.AtomContainer
and FALSE
if the answer of the rule is NO for the analyzed molecule org.openscience.cdk.interfaces.AtomContainer
??
verifyRule
in interface IDecisionRule
verifyRule
in class RuleSMARTSubstructureCDK
mol
- org.openscience.cdk.interfaces.AtomContainer
DecisionMethodException
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