verhaar.rules
Class RuleLogPRange

java.lang.Object
  extended by java.util.Observable
      extended by toxTree.tree.AbstractRule
          extended by toxTree.tree.rules.RuleDescriptor
              extended by toxTree.tree.rules.RuleDescriptorRange
                  extended by verhaar.rules.RuleLogPRange
All Implemented Interfaces:
java.io.Serializable, java.lang.Cloneable, IDecisionRule, IImplementationDetails, IRuleRange, XMLSerializable, IAlertCounter

public class RuleLogPRange
extends RuleDescriptorRange
implements IAlertCounter

0 <= LogP <= 6. Calculates XLogPDescriptor.

Author:
Nina Jeliazkova nina@acad.bg Modified Dec 17, 2006
See Also:
Serialized Form

Field Summary
protected  IAlertCounter alertsCounter
           
protected  java.lang.Object[] params
           
 
Fields inherited from class toxTree.tree.rules.RuleDescriptorRange
maxValue, minValue
 
Fields inherited from class toxTree.tree.rules.RuleDescriptor
descriptor, descriptorClass
 
Fields inherited from class toxTree.tree.AbstractRule
changes, editable, ERR_STRUCTURENOTPREPROCESSED, examples, explanation, id, logger, MSG_NO, MSG_YES, no, residueIDHidden, title
 
Fields inherited from interface toxTree.core.XMLSerializable
xmltag_CATEGORIES, xmltag_CATEGORY, xmltag_CATEGORYTHRESHOLD, xmltag_CLASS, xmltag_EXPLANATION, xmltag_ID, xmltag_METHOD, xmltag_METHODPARAMETER, xmltag_METHODS, xmltag_NAME, xmltag_RULE, xmltag_RULEEXAMPLE, xmltag_RULES, xmltag_TREEROOT
 
Constructor Summary
RuleLogPRange()
           
 
Method Summary
 java.lang.String getImplementationDetails()
           
 void incrementCounter(org.openscience.cdk.interfaces.IAtomContainer mol)
           
 boolean verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol)
          IDecisionRule.verifyRule(IAtomContainer)
 
Methods inherited from class toxTree.tree.rules.RuleDescriptorRange
equals, getMaxValue, getMinValue, getProperty, setMaxValue, setMinValue, setProperty
 
Methods inherited from class toxTree.tree.rules.RuleDescriptor
getDescriptor, getSelector, isImplemented, setDescriptor, verifyRule
 
Methods inherited from class toxTree.tree.AbstractRule
addPropertyChangeListener, clearFlags, clone, createRule, fromXML, getEditor, getExampleMolecule, getExamples, getExplanation, getID, getNum, getTitle, hideResiduesID, isEditable, isResidueIDHidden, log, log, log, makeMolecule, removePropertyChangeListener, setEditable, setExampleMolecule, setExamples, setExplanation, setID, setNum, setTitle, toShallowXML, toString, toXML
 
Methods inherited from class java.util.Observable
addObserver, clearChanged, countObservers, deleteObserver, deleteObservers, hasChanged, notifyObservers, notifyObservers, setChanged
 
Methods inherited from class java.lang.Object
finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 
Methods inherited from interface toxTree.core.IDecisionRule
addPropertyChangeListener, clearFlags, clone, getEditor, getExampleMolecule, getExplanation, getID, getNum, getSelector, getTitle, hideResiduesID, isEditable, isImplemented, isResidueIDHidden, removePropertyChangeListener, setEditable, setExampleMolecule, setExplanation, setID, setNum, setTitle, toString
 

Field Detail

alertsCounter

protected IAlertCounter alertsCounter

params

protected java.lang.Object[] params
Constructor Detail

RuleLogPRange

public RuleLogPRange()
Method Detail

getImplementationDetails

public java.lang.String getImplementationDetails()
Specified by:
getImplementationDetails in interface IImplementationDetails

verifyRule

public boolean verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol)
                   throws DecisionMethodException
Description copied from class: RuleDescriptorRange
IDecisionRule.verifyRule(IAtomContainer)

Specified by:
verifyRule in interface IDecisionRule
Overrides:
verifyRule in class RuleDescriptorRange
Parameters:
mol - org.openscience.cdk.interfaces.AtomContainer
Returns:
rule result, boolean
Throws:
DecisionMethodException

incrementCounter

public void incrementCounter(org.openscience.cdk.interfaces.IAtomContainer mol)
Specified by:
incrementCounter in interface IAlertCounter


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