toxTree.tree.cramer
Class RuleSufficientSulphonateGroups

java.lang.Object
  extended by java.util.Observable
      extended by toxTree.tree.AbstractRule
          extended by toxTree.tree.cramer.RuleSufficientSulphonateGroups
All Implemented Interfaces:
java.io.Serializable, java.lang.Cloneable, IDecisionRule, XMLSerializable

public class RuleSufficientSulphonateGroups
extends AbstractRule

Rule 33 of the Cramer scheme (see CramerRules)

Version:
0.1, 2005-5-3
Author:
Nina Jeliazkova
See Also:
Serialized Form

Field Summary
protected static SimpleReactions metabolicReactions
           
protected static java.lang.String[] metals
           
 
Fields inherited from class toxTree.tree.AbstractRule
changes, editable, ERR_STRUCTURENOTPREPROCESSED, examples, explanation, id, logger, MSG_NO, MSG_YES, no, residueIDHidden, title
 
Fields inherited from interface toxTree.core.XMLSerializable
xmltag_CATEGORIES, xmltag_CATEGORY, xmltag_CATEGORYTHRESHOLD, xmltag_CLASS, xmltag_EXPLANATION, xmltag_ID, xmltag_METHOD, xmltag_METHODPARAMETER, xmltag_METHODS, xmltag_NAME, xmltag_RULE, xmltag_RULEEXAMPLE, xmltag_RULES, xmltag_TREEROOT
 
Constructor Summary
RuleSufficientSulphonateGroups()
          Constructor
 
Method Summary
 boolean isImplemented()
           
 boolean verifyRule(org.openscience.cdk.interfaces.IAtomContainer molecule)
          IDecisionRule.verifyRule(IAtomContainer)
 
Methods inherited from class toxTree.tree.AbstractRule
addPropertyChangeListener, clearFlags, clone, createRule, equals, fromXML, getEditor, getExampleMolecule, getExamples, getExplanation, getID, getNum, getSelector, getTitle, hideResiduesID, isEditable, isResidueIDHidden, log, log, log, makeMolecule, removePropertyChangeListener, setEditable, setExampleMolecule, setExamples, setExplanation, setID, setNum, setTitle, toShallowXML, toString, toXML
 
Methods inherited from class java.util.Observable
addObserver, clearChanged, countObservers, deleteObserver, deleteObservers, hasChanged, notifyObservers, notifyObservers, setChanged
 
Methods inherited from class java.lang.Object
finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Field Detail

metals

protected static transient java.lang.String[] metals

metabolicReactions

protected static transient SimpleReactions metabolicReactions
Constructor Detail

RuleSufficientSulphonateGroups

public RuleSufficientSulphonateGroups()
Constructor

Method Detail

isImplemented

public boolean isImplemented()
Specified by:
isImplemented in interface IDecisionRule
Overrides:
isImplemented in class AbstractRule
Returns:
false if the rule is not implemented and true if it is

verifyRule

public boolean verifyRule(org.openscience.cdk.interfaces.IAtomContainer molecule)
                   throws DecisionMethodException
IDecisionRule.verifyRule(IAtomContainer)

Parameters:
molecule - org.openscience.cdk.interfaces.AtomContainer
Returns:
rule result, boolean
Throws:
DecisionMethodException


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