toxTree.query
Class TopologyOrderQueryBond
java.lang.Object
org.openscience.cdk.ChemObject
org.openscience.cdk.ElectronContainer
org.openscience.cdk.Bond
org.openscience.cdk.isomorphism.matchers.OrderQueryBond
toxTree.query.TopologyOrderQueryBond
- All Implemented Interfaces:
- java.io.Serializable, java.lang.Cloneable, org.openscience.cdk.interfaces.IBond, org.openscience.cdk.interfaces.ICDKObject, org.openscience.cdk.interfaces.IChemObject, org.openscience.cdk.interfaces.IElectronContainer, org.openscience.cdk.isomorphism.matchers.IQueryBond
public class TopologyOrderQueryBond
- extends org.openscience.cdk.isomorphism.matchers.OrderQueryBond
The same as OrderQueryBond
with additional condition to be acyclic or cyclic.
- Author:
- Nina Jeliazkova
Modified 2005-8-17
- See Also:
- Serialized Form
Nested classes/interfaces inherited from interface org.openscience.cdk.interfaces.IBond |
org.openscience.cdk.interfaces.IBond.Order, org.openscience.cdk.interfaces.IBond.Stereo |
Field Summary |
protected boolean |
inRing
|
Fields inherited from class org.openscience.cdk.Bond |
atomCount, atoms, order, stereo |
Fields inherited from class org.openscience.cdk.ElectronContainer |
electronCount |
Constructor Summary |
TopologyOrderQueryBond()
|
TopologyOrderQueryBond(org.openscience.cdk.isomorphism.matchers.IQueryAtom arg0,
org.openscience.cdk.isomorphism.matchers.IQueryAtom arg1,
org.openscience.cdk.interfaces.IBond.Order arg2)
|
TopologyOrderQueryBond(org.openscience.cdk.isomorphism.matchers.IQueryAtom arg0,
org.openscience.cdk.isomorphism.matchers.IQueryAtom arg1,
org.openscience.cdk.interfaces.IBond.Order arg2,
boolean inRing)
|
Method Summary |
boolean |
isInRing()
|
boolean |
matches(org.openscience.cdk.interfaces.IBond arg0)
|
void |
setInRing(boolean inRing)
|
Methods inherited from class org.openscience.cdk.isomorphism.matchers.OrderQueryBond |
setAtomAt, setAtoms |
Methods inherited from class org.openscience.cdk.Bond |
atoms, clone, compare, contains, get2DCenter, get3DCenter, getAtom, getAtomCount, getConnectedAtom, getConnectedAtoms, getOrder, getStereo, isConnectedTo, setAtom, setOrder, setStereo, toString |
Methods inherited from class org.openscience.cdk.ElectronContainer |
getElectronCount, setElectronCount |
Methods inherited from class org.openscience.cdk.ChemObject |
addListener, getBuilder, getFlag, getFlags, getID, getListenerCount, getNotification, getProperties, getProperty, notifyChanged, notifyChanged, removeListener, removeProperty, setFlag, setFlags, setID, setNotification, setProperties, setProperty, shallowCopy |
Methods inherited from class java.lang.Object |
equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Methods inherited from interface org.openscience.cdk.interfaces.IElectronContainer |
getElectronCount, setElectronCount |
Methods inherited from interface org.openscience.cdk.interfaces.IChemObject |
addListener, getFlag, getFlags, getID, getListenerCount, getNotification, getProperties, getProperty, notifyChanged, notifyChanged, removeListener, removeProperty, setFlag, setFlags, setID, setNotification, setProperties, setProperty |
Methods inherited from interface org.openscience.cdk.interfaces.ICDKObject |
getBuilder |
inRing
protected boolean inRing
TopologyOrderQueryBond
public TopologyOrderQueryBond()
TopologyOrderQueryBond
public TopologyOrderQueryBond(org.openscience.cdk.isomorphism.matchers.IQueryAtom arg0,
org.openscience.cdk.isomorphism.matchers.IQueryAtom arg1,
org.openscience.cdk.interfaces.IBond.Order arg2)
- Parameters:
arg0
- arg1
- arg2
-
TopologyOrderQueryBond
public TopologyOrderQueryBond(org.openscience.cdk.isomorphism.matchers.IQueryAtom arg0,
org.openscience.cdk.isomorphism.matchers.IQueryAtom arg1,
org.openscience.cdk.interfaces.IBond.Order arg2,
boolean inRing)
matches
public boolean matches(org.openscience.cdk.interfaces.IBond arg0)
- Specified by:
matches
in interface org.openscience.cdk.isomorphism.matchers.IQueryBond
- Overrides:
matches
in class org.openscience.cdk.isomorphism.matchers.OrderQueryBond
isInRing
public boolean isInRing()
- Returns:
- Returns the inRing.
setInRing
public void setInRing(boolean inRing)
- Parameters:
inRing
- The inRing to set.
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